[Home] | [Total List]

[181316_at]

Description F54B11.4 /REP_DB=WormBase Gene ID /WP=CE05928 /TR=Q20740 /GB=CAA94137.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 15.3
(-3)
A 		43.6
(3)
A 		17
(-2.6)
A 		32
(0.5)
A 		28
B 21.7
(-3)
A 		50.6
(2.8)
A 		51.8
(3)
A 		28.7
(-1.6)
A 		30
C 34.5
(-0.7)
A 		44.3
(0.6)
A 		15.6
(-3)
A 		64.1
(3)
A 		49
avr 23.8
(-3) 		46.2
(3) 		28.1
(-1.8) 		41.6
(1.8) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 49
(3)
A 		21.1
(-1.2)
A 		27.2
(-0.3)
A 		29
(-0)
A 		17.4
(-1.8)
A 		9.6
(-3)
A 		39
B 36.6
(1)
A 		35.3
(0.7)
P 		25.5
(-1.2)
A 		46.7
(3)
A 		24.9
(-1.3)
A 		16.6
(-3)
A 		30
C 46.1
(2.5)
P 		42.7
(2.1)
A 		40.6
(1.8)
A 		49.9
(3)
A 		1.4
(-3)
A 		12.6
(-1.6)
A 		49
avr 43.9
(3) 		33
(0.9) 		31.1
(0.5) 		41.9
(2.6) 		14.6
(-2.7) 		12.9
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.6
(-1.6)
A 		9.5
(3)
A 		4.4
(-3)
A 		4.7
(-2.6)
A 		5
B 6.9
(-2.3)
A 		12.5
(3)
A 		12
(2.5)
A 		6.1
(-3)
A 		6
C 11.4
(1.9)
A 		12.7
(3)
A 		5.4
(-3)
A 		10.8
(1.4)
A 		7
avr 8
(-1.9) 		11.6
(3) 		7.3
(-2.9) 		7.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9
(3)
A 		7.5
(1.7)
A 		5.9
(0.2)
A 		7.3
(1.5)
A 		5.2
(-0.4)
A 		2.3
(-3)
A 		7
B 12.7
(3)
A 		11.7
(2.1)
P 		6.2
(-3)
A 		12.4
(2.7)
A 		10.1
(0.6)
A 		6.2
(-3)
A 		7
C 17.1
(3)
P 		13
(1.5)
A 		10.3
(0.6)
A 		10
(0.4)
A 		0.4
(-3)
A 		4.2
(-1.6)
A 		17
avr 12.9
(3) 		10.7
(1.5) 		7.5
(-0.7) 		9.9
(0.9) 		5.2
(-2.3) 		4.2
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17357
Sequence Type Exemplar sequence
Representative Public ID F54B11.4 NCBI
Target Description F54B11.4 /REP_DB=WormBase Gene ID /WP=CE05928 /TR=Q20740 /GB=CAA94137.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077874 NCBI Caenorhabditis elegans F54B11.4 (F54B11.4) mRNA, complete cds. 11/11 None
F54B11.4 ENSEMBL cdna:known chromosome:CEL140:X:13592552:13593796:1 gene:F54B11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008289 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008300 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13592551-13593796(+) 94.94 100.0
Public Domain and Genome References
Gene Title
Ensembl F54B11.4
Entrez Gene 186212 Entrez gene
SwissProt Q20740 EMBL-EBI
WormBase CE05928 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94137 Hypothetical protein F54B11.4 [Caenorhabditis elegans] ref|NP_510275.1| F54B11.4 [Caenorhabditis elegans] 2.0E-84
blast CAE63116 Hypothetical protein CBG07413 [Caenorhabditis briggsae] 5.0E-46
Sequence
Target Sequence 
>C. ELEGANS:181316_AT
tgcgtgttttccttgatcaacttcaacaatctagaaatcttctcagtttgcaacagcaac
agcaacaacaacagcaaaaccaggcactaatctcatctccacacaacccaacacttcttc
cagatgtgattgctattccaaaacgtgagaccggaaattctttgaactttttaaaaactg
aaaaagttgaaaacgaaaaagaacgacaacatggagagatatcaactttttccgcaggtg
gctcaactttgcagcatgcgacttatttgagcctcgtaaacgataaagaaaattttcaag
catcaggttgcgggtgggatctgataagactccagtgtcacgatctgtttgggctatgta
agggaggatgcagagatttcgcaatagcaattaactctccgattcacgattgcaggttaa
cattccgattttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTGTTTTCCTTGATCAACTTCA 640 583 32 Antisense
AAAACCAGGCACTAATCTCATCTCC 27 133 107 Antisense
CAACCCAACACTTCTTCCAGATGTG 485 187 135 Antisense
TATCAACTTTTTCCGCAGGTGGCTC 139 655 251 Antisense
GTGGCTCAACTTTGCAGCATGCGAC 579 487 269 Antisense
GCATGCGACTTATTTGAGCCTCGTA 38 311 285 Antisense
AAGCATCAGGTTGCGGGTGGGATCT 308 151 329 Antisense
AAGACTCCAGTGTCACGATCTGTTT 618 153 357 Antisense
GTCACGATCTGTTTGGGCTATGTAA 687 463 368 Antisense
ACTCTCCGATTCACGATTGCAGGTT 622 99 425 Antisense
GCAGGTTAACATTCCGATTTTCCAA 233 291 443 Antisense
Sequence Source Affymetrix Proprietary Database