[Home] | [Total List]

[181315_at]

Description K02E11.3 /REP_DB=WormBase Gene ID /WP=CE11648 /TR=Q21141 /GB=CAB01219.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 34      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 42      6grp_total > 20      4grp_total > 18      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1477
1 2 3 4 range
A 1344.4
(-2.1)
P 		1151.2
(-3)
P 		1306.6
(-2.3)
P 		2464
(3)
P 		1313
B 986.6
(-3)
P 		1569.3
(0.1)
P 		1206.3
(-1.8)
P 		2101
(3)
P 		1114
C 1310.9
(-2.3)
P 		1648
(2.1)
P 		1255.1
(-3)
P 		1715.3
(3)
P 		460
avr 1214
(-3) 		1456.2
(-1.3) 		1256
(-2.7) 		2093.4
(3) 		879

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 728
1 2 3 4 5 6 range
A 716.9
(-1.8)
P 		1238.4
(3)
P 		801.8
(-1)
P 		1067
(1.4)
P 		583.1
(-3)
P 		597.5
(-2.9)
P 		655
B 510.8
(-3)
P 		983.6
(3)
P 		565.7
(-2.3)
P 		834.4
(1.1)
P 		636.3
(-1.4)
P 		533.7
(-2.7)
P 		473
C 598.2
(-2.9)
P 		1166.5
(3)
P 		767.2
(-1.2)
P 		767.7
(-1.2)
P 		590.7
(-3)
P 		721.3
(-1.6)
P 		576
avr 608.6
(-2.9) 		1129.5
(3) 		711.6
(-1.8) 		889.7
(0.3) 		603.4
(-3) 		617.5
(-2.8) 		526
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 489.5
(3)
P 		249.9
(-3)
P 		341.6
(-0.7)
P 		360.7
(-0.2)
P 		240
B 314.6
(-1.7)
P 		387.6
(0.9)
P 		279.5
(-3)
P 		447.7
(3)
P 		168
C 434
(1.7)
P 		473.8
(3)
P 		437.4
(1.8)
P 		289.2
(-3)
P 		185
avr 412.7
(3) 		370.4
(-1.2) 		352.8
(-3) 		365.9
(-1.7) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 132.2
(-3)
P 		440.4
(3)
P 		174.6
(-2.2)
P 		270.6
(-0.3)
P 		176
(-2.1)
P 		145.5
(-2.7)
P 		308
B 177.7
(-1.7)
P 		327.4
(3)
P 		137.4
(-3)
P 		221
(-0.4)
P 		258.5
(0.8)
P 		199
(-1.1)
P 		190
C 221.7
(-1)
P 		355.9
(3)
P 		195.3
(-1.8)
P 		154.4
(-3)
P 		191.1
(-1.9)
P 		241.5
(-0.4)
P 		202
avr 177.2
(-2.8) 		374.6
(3) 		169.1
(-3) 		215.3
(-1.7) 		208.5
(-1.8) 		195.3
(-2.2) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13684
Sequence Type Exemplar sequence
Representative Public ID K02E11.3 NCBI
Target Description K02E11.3 /REP_DB=WormBase Gene ID /WP=CE11648 /TR=Q21141 /GB=CAB01219.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074122(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074122 NCBI Caenorhabditis elegans K02E11.3 (K02E11.3) mRNA, complete cds. 11/11 None
SNAP00000039261 ENSEMBL cdna:SNAP chromosome:CEL140:V:14248947:14249448:-1 11/11 None
GENEFINDER00000039266 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14248947:14249448:-1 11/11 None
K02E11.3 ENSEMBL cdna:known chromosome:CEL140:V:14248947:14249448:-1 gene:K02E11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14248946-14249448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E11.3
Entrez Gene 186894 Entrez gene
SwissProt Q21141 EMBL-EBI
WormBase CE11648 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01219 Hypothetical protein K02E11.3 [Caenorhabditis elegans] ref|NP_506523.1| K02E11.3 [Caenorhabditis elegans] 2.0E-62
blast AAM45361 Hypothetical protein T19H12.3 [Caenorhabditis elegans] ref|NP_001024148.1| T19H12.3 [Caenorhabditis elegans] 2.0E-38
blast CAE60995 Hypothetical protein CBG04732 [Caenorhabditis briggsae] 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:181315_AT
tctgttgcgctacttctgttcacagttgcctacgtaaaatctgcaattgatattaatgtc
ccatccactctttacataaaggaaggtgatacaggaactatcggcttacctgtgtcagca
aattatagacgagaagtgcacaatcctaaaggaacaatggatgagcagttatacagagtt
tgtaatgggaaaaataagacaacttgcggattttgggaggatgttaaaacaaagaaaaaa
gtcaaatccggagtcaccacatacaataaaaataagaaagctttggttatcaagaaaatg
ttggtctctgatttcggaaactacatgactggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGTTGCGCTACTTCTGTTCACAG 145 609 25 Antisense
TTCTGTTCACAGTTGCCTACGTAAA 285 693 38 Antisense
TGATATTAATGTCCCATCCACTCTT 563 563 72 Antisense
GTCCCATCCACTCTTTACATAAAGG 60 475 82 Antisense
GAACTATCGGCTTACCTGTGTCAGC 384 349 119 Antisense
TCGGCTTACCTGTGTCAGCAAATTA 381 607 125 Antisense
GACGAGAAGTGCACAATCCTAAAGG 657 377 152 Antisense
GACAACTTGCGGATTTTGGGAGGAT 621 363 222 Antisense
AGTCAAATCCGGAGTCACCACATAC 490 59 264 Antisense
AATGTTGGTCTCTGATTTCGGAAAC 701 157 321 Antisense
GATTTCGGAAACTACATGACTGGTA 514 427 334 Antisense
Sequence Source Affymetrix Proprietary Database