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[181314_at]

Description F52E10.2 /REP_DB=WormBase Gene ID /WP=CE03394 /TR=Q20668 /GB=CAA91053.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 0.8
(-3)
A 		1.3
(-2.5)
A 		1.4
(-2.4)
A 		7.1
(3)
A 		6
B 24.9
(3)
A 		22.8
(2.4)
A 		2.2
(-3)
A 		5.3
(-2.2)
A 		23
C 4.6
(-2.3)
A 		1.9
(-3)
A 		2.8
(-2.8)
A 		24.5
(3)
A 		23
avr 10.1
(1.7) 		8.7
(0.9) 		2.1
(-3) 		12.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 24.2
(3)
A 		3.7
(-2.6)
A 		22
(2.4)
A 		5.9
(-2)
A 		7.7
(-1.5)
A 		2.1
(-3)
A 		22
B 4.6
(-2)
A 		9.4
(-0.5)
A 		21.3
(3)
A 		1.1
(-3)
A 		13.3
(0.6)
A 		2
(-2.7)
A 		20
C 3.4
(-2)
A 		1.5
(-3)
A 		7.8
(0.3)
A 		13.1
(3)
A 		1.6
(-2.9)
A 		1.7
(-2.9)
A 		12
avr 10.7
(0.5) 		4.9
(-1.8) 		17
(3) 		6.7
(-1.1) 		7.5
(-0.8) 		1.9
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.3
(-3)
A 		0.3
(-3)
A 		0.4
(-2.1)
A 		1
(3)
A 		1
B 7.9
(3)
A 		5.6
(1.1)
A 		0.5
(-3)
A 		1.1
(-2.5)
A 		7
C 1.5
(-1.5)
A 		0.6
(-3)
A 		1
(-2.3)
A 		4.1
(3)
A 		4
avr 3.2
(3) 		2.2
(0.7) 		0.6
(-3) 		2.1
(0.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 4.5
(2.6)
A 		1.3
(-1.9)
A 		4.8
(3)
A 		1.5
(-1.6)
A 		2.3
(-0.5)
A 		0.5
(-3)
A 		4
B 1.6
(-1.5)
A 		3.1
(0.3)
A 		5.2
(2.8)
A 		0.3
(-3)
A 		5.4
(3)
A 		0.8
(-2.4)
A 		5
C 1.3
(-0.5)
A 		0.4
(-3)
A 		2
(1.4)
A 		2.6
(3)
A 		0.5
(-2.7)
A 		0.6
(-2.5)
A 		2
avr 2.5
(0.4) 		1.6
(-1.2) 		4
(3) 		1.5
(-1.4) 		2.7
(0.7) 		0.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18007
Sequence Type Exemplar sequence
Representative Public ID F52E10.2 NCBI
Target Description F52E10.2 /REP_DB=WormBase Gene ID /WP=CE03394 /TR=Q20668 /GB=CAA91053.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078250 NCBI Caenorhabditis elegans F52E10.2 (F52E10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000003307 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16282719:16283116:-1 9/11 None
F52E10.2 ENSEMBL cdna:known chromosome:CEL140:X:16282719:16283116:-1 gene:F52E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16282718-16283116(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52E10.2
Entrez Gene 186117 Entrez gene
SwissProt Q20668 EMBL-EBI
WormBase CE03394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91053 Hypothetical protein F52E10.2 [Caenorhabditis elegans] ref|NP_510651.1| F52E10.2 [Caenorhabditis elegans] 7.0E-52
blast CAA91053 Hypothetical protein F52E10.2 [Caenorhabditis elegans] ref|NP_510651.1| F52E10.2 [Caenorhabditis elegans] 1.0E-48
Sequence
Target Sequence 
>C. ELEGANS:181314_AT
atgtttctaattgcctttttcagcaaaaaagatgtactagattacaaagatgcccgttgt
actagcgaacaggagtccgatttcgatcttaaaggcgaagaagacggagatggtattttc
agcgactattatgacatcactatgtttataacccacaactgctccagtctaaacaacacc
attcggaaagtccaaagaattatcaagaaggttcccgtaacagaaaaccatgtcgaactt
agcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTCTAATTGCCTTTTTCAGCA 502 47 13 Antisense
GTACTAGATTACAAAGATGCCCGTT 422 459 46 Antisense
GATGCCCGTTGTACTAGCGAACAGG 120 415 61 Antisense
GAACAGGAGTCCGATTTCGATCTTA 248 351 79 Antisense
GACGGAGATGGTATTTTCAGCGACT 391 377 115 Antisense
TTCAGCGACTATTATGACATCACTA 527 685 130 Antisense
TATGTTTATAACCCACAACTGCTCC 206 655 153 Antisense
AACTGCTCCAGTCTAAACAACACCA 142 143 169 Antisense
CCAGTCTAAACAACACCATTCGGAA 215 271 176 Antisense
TTATCAAGAAGGTTCCCGTAACAGA 9 679 212 Antisense
GAAAACCATGTCGAACTTAGCAATT 142 355 235 Antisense
Sequence Source Affymetrix Proprietary Database