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[181313_at]

Description ZK1037.1 /REP_DB=WormBase Gene ID /WP=CE16754 /TR=O45984 /GB=CAB03501.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 13.4
(-3)
A 		22.2
(-1.8)
A 		23
(-1.7)
A 		58.5
(3)
P 		45
B 51.8
(3)
A 		14.2
(-1.8)
A 		4.4
(-3)
A 		22.7
(-0.7)
A 		47
C 3.8
(-2.7)
A 		1.6
(-3)
A 		8.4
(-2.2)
A 		50
(3)
A 		48
avr 23
(-0.9) 		12.7
(-2.8) 		11.9
(-3) 		43.7
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 18.4
(0.3)
A 		9.3
(-1.6)
A 		20
(0.7)
A 		2.9
(-3)
A 		15.7
(-0.3)
A 		30.9
(3)
A 		28
B 13.5
(2)
A 		13.3
(1.9)
A 		15.7
(3)
A 		2.4
(-3)
A 		11.6
(1.2)
A 		2.4
(-3)
A 		13
C 2.9
(-2.8)
A 		2
(-3)
A 		11
(-1.3)
A 		34.2
(3)
A 		15.8
(-0.4)
A 		20
(0.4)
A 		32
avr 11.6
(-0.9) 		8.2
(-3) 		15.6
(1.6) 		13.2
(0.1) 		14.4
(0.9) 		17.8
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.9
(-2.8)
A 		4.8
(-3)
A 		6
(-1.1)
A 		8.6
(3)
P 		4
B 16.5
(3)
A 		3.5
(-2)
A 		1
(-3)
A 		4.8
(-1.5)
A 		16
C 1.3
(-2.3)
A 		0.4
(-3)
A 		2.9
(-1.1)
A 		8.4
(3)
A 		8
avr 7.6
(3) 		2.9
(-3) 		3.3
(-2.5) 		7.3
(2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.4
(-0.6)
A 		3.3
(-0.7)
A 		4.4
(0.3)
A 		0.7
(-3)
A 		4.7
(0.5)
A 		7.5
(3)
A 		7
B 4.7
(3)
A 		4.4
(2.6)
A 		3.8
(1.7)
A 		0.6
(-3)
A 		4.7
(3)
A 		0.9
(-2.6)
A 		4
C 1.1
(-2.5)
A 		0.6
(-3)
A 		2.8
(-0.9)
A 		6.9
(3)
A 		5.1
(1.3)
A 		6.7
(2.8)
A 		6
avr 3.1
(-2) 		2.8
(-2.7) 		3.7
(-0.4) 		2.7
(-3) 		4.8
(2.5) 		5
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12716
Sequence Type Exemplar sequence
Representative Public ID ZK1037.1 NCBI
Target Description ZK1037.1 /REP_DB=WormBase Gene ID /WP=CE16754 /TR=O45984 /GB=CAB03501.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074394 NCBI Caenorhabditis elegans ZK1037.1 (ZK1037.1) mRNA, complete cds. 11/11 None
GENEFINDER00000019048 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15313666:15315253:1 9/11 None
ZK1037.1 ENSEMBL cdna:known chromosome:CEL140:V:15312706:15315006:1 gene:ZK1037.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15312705-15315006(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1037.1
Entrez Gene 191497 Entrez gene
SwissProt O45984 EMBL-EBI
WormBase CE16754 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03501 Hypothetical protein ZK1037.1 [Caenorhabditis elegans] ref|NP_506795.1| ZK1037.1 [Caenorhabditis elegans] 0.0
blast CAB03501 Hypothetical protein ZK1037.1 [Caenorhabditis elegans] ref|NP_506795.1| ZK1037.1 [Caenorhabditis elegans] 1.0E-156
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 3.0E-55
blast CAB03430 Hypothetical protein T26E4.1 [Caenorhabditis elegans] ref|NP_506931.1| T26E4.1 [Caenorhabditis elegans] 8.0E-51
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 7.0E-46
blast NP_503649 Y19D10A.7 [Caenorhabditis elegans] gb|AAK68420.1| Hypothetical protein Y19D10A.7 [Caenorhabditis elegans] 7.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.9E-25
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-16
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.4E-17
Sequence
Target Sequence 
>C. ELEGANS:181313_AT
gggactcactaacttgacaactgttatatgcgctgacttccgtatttttaacaatttcag
aatgaacaaattgaatttgccgaatttgataaatatcgtgccaagagatgctaatggttc
aaggatcaaagtttcaattcttagttccatgctaacaactgatgtgacgatccaagaagc
tatgaccttccttagcaatcctgatgtagactttgaaatatcacaagtggattttattaa
tacaaaaacagacacctgcaatgtgggtaacggtattcctgaaggatgtaagcacgtttt
tggtgatttgaaaatcggtcaggataatgagcatttggtaagcagattgaaatcagttga
ggttttatttggaggcctgctaataagtcgaacaagcttgacaactattgacttttttga
taatctgaaatacattttattgcacacttcgtcgatggaggaagccattagagttgaata
caatgtaaacttgacaaattttttattccccagtttgaaggtaaatcagataattctacc
acttgaatgccaacatttcagcgaatttatccaacttcaaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACTCACTAACTTGACAACTGTT 358 495 780 Antisense
GACAACTGTTATATGCGCTGACTTC 292 365 795 Antisense
ATGCGCTGACTTCCGTATTTTTAAC 309 41 807 Antisense
AAGTTTCAATTCTTAGTTCCATGCT 691 155 908 Antisense
GTGACGATCCAAGAAGCTATGACCT 618 481 943 Antisense
CTATGACCTTCCTTAGCAATCCTGA 195 223 959 Antisense
GCAATGTGGGTAACGGTATTCCTGA 105 315 1037 Antisense
GGAGGCCTGCTAATAAGTCGAACAA 167 515 1150 Antisense
TTTATTGCACACTTCGTCGATGGAG 182 675 1215 Antisense
TTCTACCACTTGAATGCCAACATTT 568 691 1313 Antisense
CAGCGAATTTATCCAACTTCAACCG 17 203 1338 Antisense
Sequence Source Affymetrix Proprietary Database