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[181311_s_at]

Description F49C12.9 /REP_DB=WormBase Gene ID /WP=CE10780 /TR=P90879 /GB=CAA92520.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 33      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 281
1 2 3 4 range
A 423.7
(-3)
P 		695.3
(2.8)
P 		656.8
(2)
P 		704.3
(3)
P 		281
B 554.1
(-3)
P 		635.4
(0.6)
P 		645
(1)
P 		690.8
(3)
P 		137
C 491.1
(-3)
P 		611.8
(2.2)
P 		623.1
(2.7)
P 		629.5
(3)
P 		138
avr 489.6
(-3) 		647.5
(2.1) 		641.6
(1.9) 		674.9
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 599.7
(-2.3)
P 		546.2
(-2.8)
P 		527.2
(-3)
P 		690.2
(-1.4)
P 		879
(0.5)
P 		1131.1
(3)
P 		604
B 508.4
(-3)
P 		545.6
(-2.6)
P 		628.4
(-1.6)
P 		781.3
(0.1)
P 		739
(-0.4)
P 		1034.9
(3)
P 		527
C 357.4
(-3)
P 		491
(-2)
P 		672.5
(-0.7)
P 		734.1
(-0.2)
P 		869.9
(0.8)
P 		1173.1
(3)
P 		816
avr 488.5
(-3) 		527.6
(-2.6) 		609.4
(-1.8) 		735.2
(-0.6) 		829.3
(0.3) 		1113
(3) 		625
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 154.3
(1.5)
P 		150.9
(1.2)
P 		171.7
(3)
P 		103.1
(-3)
P 		69
B 176.7
(3)
P 		156.9
(-1)
P 		149.5
(-2.5)
P 		147.2
(-3)
P 		30
C 162.6
(0.1)
P 		175.9
(0.8)
P 		217.2
(3)
P 		106.1
(-3)
P 		111
avr 164.5
(1.5) 		161.2
(1.2) 		179.5
(3) 		118.8
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 110.6
(-3)
P 		194.2
(0)
P 		114.8
(-2.8)
P 		175.1
(-0.7)
P 		265.3
(2.6)
P 		275.4
(3)
P 		165
B 176.9
(-2.4)
P 		181.6
(-2.3)
P 		152.6
(-3)
P 		206.9
(-1.6)
P 		300.3
(0.8)
P 		385.9
(3)
P 		233
C 132.5
(-3)
P 		149.8
(-2.6)
P 		171.2
(-2.1)
P 		147.6
(-2.7)
P 		281.5
(0.4)
P 		392.7
(3)
P 		260
avr 140
(-3) 		175.2
(-2) 		146.2
(-2.8) 		176.5
(-2) 		282.4
(1) 		351.3
(3) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181311_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10070
Sequence Type Exemplar sequence
Representative Public ID F49C12.9 NCBI
Target Description F49C12.9 /REP_DB=WormBase Gene ID /WP=CE10780 /TR=P90879 /GB=CAA92520.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069230 NCBI Caenorhabditis elegans F49C12.9 (F49C12.9) mRNA, complete cds. 11/11 None
SNAP00000032696 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9314947:9316084:-1 11/11 None
GENEFINDER00000032705 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9314947:9316084:-1 11/11 None
F49C12.9 ENSEMBL cdna:known chromosome:CEL140:IV:9314820:9316144:-1 gene:F49C12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9314952-9316090(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C12.9
Entrez Gene 177752 Entrez gene
SwissProt P90879 EMBL-EBI
WormBase CE10780 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92520 Hypothetical protein F49C12.9 [Caenorhabditis elegans] ref|NP_501631.1| F49C12.9 [Caenorhabditis elegans] 1.0E-143
blast CAA92520 Hypothetical protein F49C12.9 [Caenorhabditis elegans] ref|NP_501631.1| F49C12.9 [Caenorhabditis elegans] 1.0E-132
blast CAE74056 Hypothetical protein CBG21708 [Caenorhabditis briggsae] 4.0E-67
blast CAE74056 Hypothetical protein CBG21708 [Caenorhabditis briggsae] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 1.8E-6
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 1.8E-6
Sequence
Target Sequence 
>C. ELEGANS:181311_S_AT
acacgcccaaatgatcgtcggcttcatggtttcaaccacgactttgcacttccagatcac
atgacaacgcttcttgagaaacacccacagctggttcatgataatcaatttttatctgtt
ctgagtgattggtcattattccgtgcctattgcgttcagaacgatttcaaagatgatcca
attcggggacaattcatgtacacgaatcccgatttcttgaaagtagtagaaaatattcta
tcgacagtaggatctcgttacggatacgaaaaccttgattatgcaaacgtggaaagaaat
agaccaggaatgcttgcagctcagcgaccaattggaggtgctcaaccggttactcatgcg
ttgcttcaaaatgctctccaagcagccctggcaaacattgcagttcctccggcaaatcgg
gttccagctcccgccaatgtccagccagcgcaacagcagcaagaagagccaatgcagcaa
ggatatgaacaacaagctgcgactctccgcgagtttggatttgaaaatgatgagctcatt
cagttggctctcgaacagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACGCCCAAATGATCGTCGGCTTC 682 109 319 Antisense
ATGGTTTCAACCACGACTTTGCACT 497 51 344 Antisense
ACTTTGCACTTCCAGATCACATGAC 102 103 359 Antisense
GAAACACCCACAGCTGGTTCATGAT 182 357 396 Antisense
GTGATTGGTCATTATTCCGTGCCTA 679 483 443 Antisense
TATTCCGTGCCTATTGCGTTCAGAA 556 663 455 Antisense
CCAGGAATGCTTGCAGCTCAGCGAC 671 269 622 Antisense
TTGGAGGTGCTCAACCGGTTACTCA 306 709 650 Antisense
CGGTTACTCATGCGTTGCTTCAAAA 460 243 665 Antisense
TCTCCAAGCAGCCCTGGCAAACATT 665 609 693 Antisense
CTCATTCAGTTGGCTCTCGAACAGG 5 231 853 Antisense
Sequence Source Affymetrix Proprietary Database