[Home] | [Total List]

[181310_at]

Description Y38H6C.9 /REP_DB=WormBase Gene ID /WP=CE19103 /TR=Q9XX50 /GB=CAA20989.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 05      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 60.6
(-0.8)
A 		61.7
(-0.6)
A 		44.4
(-3)
A 		87.7
(3)
A 		43
B 44.7
(1.4)
A 		8.3
(-3)
A 		52.3
(2.3)
A 		58.2
(3)
A 		50
C 51.7
(-1.1)
A 		35.7
(-2.8)
A 		34.1
(-3)
A 		89.8
(3)
P 		56
avr 52.3
(-0.6) 		35.2
(-3) 		43.6
(-1.8) 		78.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 104.9
(3)
P 		94.6
(2.4)
P 		63.5
(0.4)
M 		53.5
(-0.2)
A 		8.4
(-3)
A 		49.3
(-0.5)
A 		97
B 79.7
(3)
P 		66.3
(1.7)
A 		39.2
(-1)
M 		58.9
(1)
A 		33.5
(-1.5)
A 		18.3
(-3)
A 		61
C 96.8
(3)
P 		70.5
(0.8)
P 		86.7
(2.2)
P 		26.4
(-2.8)
A 		38.7
(-1.8)
A 		23.9
(-3)
A 		73
avr 93.8
(3) 		77.1
(1.5) 		63.1
(0.2) 		46.3
(-1.3) 		26.9
(-3) 		30.5
(-2.7) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22
(3)
A 		13.4
(-2)
A 		11.6
(-3)
A 		12.8
(-2.3)
A 		10
B 14.3
(3)
A 		2
(-3)
A 		12.1
(1.9)
A 		12.4
(2.1)
A 		12
C 17.1
(3)
A 		10.3
(-3)
A 		11.9
(-1.6)
A 		15.1
(1.2)
P 		7
avr 17.8
(3) 		8.6
(-3) 		11.9
(-0.8) 		13.4
(0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 19.3
(0.2)
P 		33.6
(3)
P 		13.8
(-0.8)
M 		13.6
(-0.9)
A 		2.5
(-3)
A 		12
(-1.2)
A 		31
B 27.7
(3)
P 		22.1
(1.4)
A 		9.5
(-2.2)
M 		15.6
(-0.5)
A 		13.6
(-1)
A 		6.8
(-3)
A 		21
C 35.9
(3)
P 		21.5
(0.2)
P 		22.1
(0.3)
P 		5.3
(-3)
A 		12.5
(-1.6)
A 		8
(-2.5)
A 		31
avr 27.6
(3) 		25.7
(2.4) 		15.1
(-1) 		11.5
(-2.2) 		9.5
(-2.8) 		8.9
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13120
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.9 NCBI
Target Description Y38H6C.9 /REP_DB=WormBase Gene ID /WP=CE19103 /TR=Q9XX50 /GB=CAA20989.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075552 NCBI Caenorhabditis elegans Y38H6C.9 (Y38H6C.9) mRNA, complete cds. 11/11 None
SNAP00000041323 ENSEMBL cdna:SNAP chromosome:CEL140:V:20518431:20520360:-1 11/11 None
GENEFINDER00000041342 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20518431:20519493:-1 11/11 None
Y38H6C.9 ENSEMBL cdna:known chromosome:CEL140:V:20518431:20519493:-1 gene:Y38H6C.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20518430-20519493(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.9
Entrez Gene 189690 Entrez gene
SwissProt Q9XX50 EMBL-EBI
WormBase CE19103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20989 Hypothetical protein Y38H6C.9 [Caenorhabditis elegans] ref|NP_507953.1| Y38H6C.9 [Caenorhabditis elegans] 1.0E-160
blast CAA20989 Hypothetical protein Y38H6C.9 [Caenorhabditis elegans] ref|NP_507953.1| Y38H6C.9 [Caenorhabditis elegans] 1.0E-101
blast CAA20990 Hypothetical protein Y38H6C.11 [Caenorhabditis elegans] ref|NP_507954.1| Y38H6C.11 [Caenorhabditis elegans] 5.0E-44
blast CAA20988 Hypothetical protein Y38H6C.10 [Caenorhabditis elegans] ref|NP_507952.1| Y38H6C.10 [Caenorhabditis elegans] 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-5
Sequence
Target Sequence 
>C. ELEGANS:181310_AT
gggctgcgcaaattttggcacttttcaaggaaggttatctggagaaaatctacgtggatt
gtgtaaccggtgccatttttgagaaattagttgaactggagcaattcaaaatgtgcaagt
acataaaattggaagcaagggttctgtcggagcaacaactattaaaattcgattcatctt
tcaaagttaactatgatttcctgcaacatgccgaacggttagagttgtcgctttgtgatt
tggagcccgaggatgcttgggaaattataaagaatttccgctcgagaccacaacttccta
ttaactcgtttttcaaaattttcgtggataattatgtaaagagtgggaaaattgttcgct
tgtttgatgttcagccaaaaaacgaggaagagattgcagaaattacttgctttgaacacg
ttcaactcttcgacatggaagatcggaacaaacttctggtggttggtatgtggcgccgtg
ttctatatggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTGCGCAAATTTTGGCACTTTT 480 491 320 Antisense
GGATTGTGTAACCGGTGCCATTTTT 390 487 375 Antisense
GCAAGGGTTCTGTCGGAGCAACAAC 203 321 454 Antisense
TGATTTCCTGCAACATGCCGAACGG 150 565 513 Antisense
GTCGCTTTGTGATTTGGAGCCCGAG 473 473 546 Antisense
TAAAGAATTTCCGCTCGAGACCACA 313 639 587 Antisense
AGACCACAACTTCCTATTAACTCGT 89 71 604 Antisense
GTTCGCTTGTTTGATGTTCAGCCAA 87 443 673 Antisense
TGAACACGTTCAACTCTTCGACATG 212 573 732 Antisense
TTCTGGTGGTTGGTATGTGGCGCCG 43 691 773 Antisense
TGTGGCGCCGTGTTCTATATGGATC 290 555 788 Antisense
Sequence Source Affymetrix Proprietary Database