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[181308_s_at]

Description C37H5.9 /REP_DB=WormBase Gene ID /WP=CE08632 /TR=P91137 /GB=AAB42372.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 12      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 63      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 646
1 2 3 4 range
A 674.8
(3)
P 		257.6
(-1.8)
P 		321
(-1.1)
P 		151.1
(-3)
A 		524
B 750
(3)
P 		271
(-1.4)
P 		490.2
(0.6)
P 		103.6
(-3)
A 		646
C 700.6
(3)
P 		277.4
(-1.6)
P 		363.2
(-0.7)
P 		148.9
(-3)
A 		552
avr 708.5
(3) 		268.7
(-1.6) 		391.5
(-0.3) 		134.5
(-3) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 629
1 2 3 4 5 6 range
A 804.9
(3)
P 		707
(1.9)
P 		717.5
(2)
P 		671.3
(1.5)
P 		385.9
(-1.7)
P 		269
(-3)
P 		536
B 897.7
(3)
P 		658.4
(0.3)
P 		789.5
(1.8)
P 		526.9
(-1.2)
P 		379.2
(-2.8)
P 		362.6
(-3)
P 		535
C 866.6
(3)
P 		671.7
(0.4)
P 		734.7
(1.2)
P 		555.8
(-1.2)
P 		429.5
(-2.9)
P 		420.4
(-3)
P 		446
avr 856.4
(3) 		679
(0.9) 		747.2
(1.7) 		584.7
(-0.2) 		398.2
(-2.4) 		350.7
(-3) 		506
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 245.7
(3)
P 		55.9
(-2.1)
P 		83.9
(-1.3)
P 		22.1
(-3)
A 		224
B 239.2
(3)
P 		66.9
(-1.8)
P 		113.6
(-0.5)
P 		22.1
(-3)
A 		217
C 231.9
(3)
P 		79.8
(-1.4)
P 		126.6
(-0.1)
P 		25.1
(-3)
A 		207
avr 238.9
(3) 		67.5
(-1.8) 		108
(-0.6) 		23.1
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 148.4
(-0.3)
P 		251.5
(3)
P 		156.2
(-0.1)
P 		170.2
(0.4)
P 		116.5
(-1.4)
P 		65.5
(-3)
P 		186
B 312.3
(3)
P 		219.2
(-0.2)
P 		191.7
(-1.1)
P 		139.6
(-2.9)
P 		154.1
(-2.4)
P 		135.2
(-3)
P 		177
C 321.2
(3)
P 		205
(-0.3)
P 		187
(-0.8)
P 		111.8
(-3)
P 		139
(-2.2)
P 		140.7
(-2.2)
P 		209
avr 260.6
(3) 		225.2
(1.6) 		178.3
(-0.4) 		140.5
(-1.9) 		136.5
(-2.1) 		113.8
(-3) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181308_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15256
Sequence Type Exemplar sequence
Representative Public ID C37H5.9 NCBI
Target Description C37H5.9 /REP_DB=WormBase Gene ID /WP=CE08632 /TR=P91137 /GB=AAB42372.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071892(11), NM_171452(11), NM_171927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071892 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-9) (nas-9) mRNA, complete cds. 11/11 A 
NM_171452 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-9) (nas-9) mRNA, complete cds. 11/11 A 
NM_171927 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-9) (nas-9) mRNA, complete cds. 11/11 A 
SNAP00000016585 ENSEMBL cdna:SNAP chromosome:CEL140:V:4835851:4839733:-1 11/11 None
GENEFINDER00000016601 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4835851:4840379:-1 11/11 None
C37H5.9c.1 ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839824:-1 gene:C37H5.9 11/11 A 
C37H5.9b ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839733:-1 gene:C37H5.9 11/11 A 
C37H5.9c.2 ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839779:-1 gene:C37H5.9 11/11 A 
C37H5.9a ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839733:-1 gene:C37H5.9 11/11 A 
C37H5.9c.3 ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839797:-1 gene:C37H5.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4835850-4839733(-) 100.0 100.0
Public Domain and Genome References
Ensembl C37H5.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84845 Nematode astacin protease protein 9, isoform c [Caenorhabditis elegans] ref|NP_504293.2| Nematode AStacin protease family member (nas-9) [Caenorhabditis elegans] 0.0
blast AAL16314 Nematode astacin protease protein 9, isoform b [Caenorhabditis elegans] ref|NP_741532.1| Nematode AStacin protease family member (nas-9) [Caenorhabditis elegans] sp|P91137|NAS9_CAEEL Zinc metalloproteinase nas-9 precursor (Nematode astacin 9) 0.0
blast AAB42372 Nematode astacin protease protein 9, isoform a [Caenorhabditis elegans] ref|NP_741531.1| Nematode AStacin protease family member (nas-9) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 4.0E-69
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-5
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 4.0E-69
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-5
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 7.1E-12
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 2.1E-31
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-5
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 5.6E-12
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 3.0E-49
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016601 1 42-64
Sequence
Target Sequence 
>C. ELEGANS:181308_S_AT
acatccgggatgctctacacgaaatttcaatcaacacctgcatcctattcaggtacaatg
caacgccaaaaggatatcacttgaattatatgaaagttgatagcacgaccttctgcggtc
tatcctacgtgggacggaccgatccggccaacccgatttacttgagcttccagtgtgggg
atatcgactggtcaaacatcgacccccaacactatgacacatttgcgatatccgacgcga
aactgtacacatcctacggtaccaagtacgcctacgactctataatgcactataacgcat
atctcggcgccaaggaccccaacaagccgacgatgatcccgttggtgaatccacaggaga
acaccccgaaactgggtcaacgagccaaactgacccgcggcgacatccggttgctcaaaa
aaatgtactgccgtccgggatgtgacgatcagaatgtgcactgcggcacgtgggctctgc
atggctattgcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCCGGGATGCTCTACACGAAAT 499 103 1013 Antisense
CAATCAACACCTGCATCCTATTCAG 396 181 1040 Antisense
CTATCCTACGTGGGACGGACCGATC 108 225 1132 Antisense
CCAACCCGATTTACTTGAGCTTCCA 432 273 1160 Antisense
TCGACTGGTCAAACATCGACCCCCA 586 601 1196 Antisense
ACCCCCAACACTATGACACATTTGC 669 89 1214 Antisense
TATCCGACGCGAAACTGTACACATC 555 657 1241 Antisense
ACACATCCTACGGTACCAAGTACGC 477 107 1259 Antisense
ACAAGCCGACGATGATCCCGTTGGT 643 111 1334 Antisense
GACGATCAGAATGTGCACTGCGGCA 388 379 1456 Antisense
GTGGGCTCTGCATGGCTATTGCAAG 320 489 1482 Antisense
Sequence Source Affymetrix Proprietary Database