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[181306_at] 7TM chemoreceptor, sri family

Description C41G6.11 /REP_DB=WormBase Gene ID /WP=CE23587 /TR=O17663 /GB=CAB02835.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 03      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 24.5
(-2.8)
A 		22
(-3)
A 		24.6
(-2.8)
A 		98.2
(3)
A 		76
B 72.4
(1.7)
A 		15.2
(-3)
A 		34.4
(-1.4)
A 		88.9
(3)
P 		74
C 18.5
(-2.5)
A 		16.4
(-2.6)
A 		6.2
(-3)
A 		170
(3)
M 		164
avr 38.5
(-1.8) 		17.9
(-3) 		21.7
(-2.8) 		119
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 11
(-2.3)
A 		28.9
(-0.4)
A 		61.5
(3)
A 		13.5
(-2)
A 		3.9
(-3)
A 		20.7
(-1.3)
A 		58
B 36.9
(0.3)
A 		65.7
(3)
A 		5.7
(-2.7)
A 		24.2
(-1)
A 		35
(0.1)
A 		2.7
(-3)
A 		63
C 6.7
(-2.6)
A 		31.3
(-0)
A 		19.2
(-1.3)
A 		60.2
(3)
A 		10.2
(-2.2)
A 		2.6
(-3)
A 		58
avr 18.2
(-1.3) 		42
(3) 		28.8
(0.6) 		32.6
(1.3) 		16.4
(-1.6) 		8.7
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 8.9
(-0.4)
A 		4.8
(-3)
A 		6.4
(-2)
A 		14.4
(3)
A 		10
B 23.1
(3)
A 		3.8
(-3)
A 		8
(-1.7)
A 		18.9
(1.7)
P 		19
C 6.1
(-2.1)
A 		4.7
(-2.4)
A 		2.1
(-3)
A 		28.7
(3)
M 		27
avr 12.7
(0.1) 		4.4
(-3) 		5.5
(-2.6) 		20.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2
(-2.6)
A 		10.3
(1.5)
A 		13.4
(3)
A 		3.4
(-1.9)
A 		1.2
(-3)
A 		5.1
(-1.1)
A 		12
B 12.9
(0.4)
A 		21.9
(3)
A 		1.4
(-2.9)
A 		6.4
(-1.4)
A 		14.2
(0.8)
A 		1
(-3)
A 		21
C 2.5
(-2.1)
A 		9.5
(1.6)
A 		4.9
(-0.9)
A 		12.1
(3)
A 		3.3
(-1.7)
A 		0.9
(-3)
A 		11
avr 5.8
(-1.2) 		13.9
(3) 		6.6
(-0.8) 		7.3
(-0.4) 		6.2
(-1) 		2.3
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14694
Sequence Type Exemplar sequence
Representative Public ID C41G6.11 NCBI
Target Description C41G6.11 /REP_DB=WormBase Gene ID /WP=CE23587 /TR=O17663 /GB=CAB02835.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074357 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-24) (sri-24) mRNA, complete cds. 11/11 None
GENEFINDER00000010452 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15214755:15216292:1 11/11 None
C41G6.11 ENSEMBL cdna:known chromosome:CEL140:V:15214755:15216292:1 gene:C41G6.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010434 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15214754-15216292(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-24
Ensembl C41G6.11
Entrez Gene 183387 Entrez gene
SwissProt O17663 EMBL-EBI
WormBase CE23587 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02835 Hypothetical protein C41G6.11 [Caenorhabditis elegans] ref|NP_506758.1| Serpentine Receptor, class I family member (sri-24) [Caenorhabditis elegans] 0.0
blast CAB02835 Hypothetical protein C41G6.11 [Caenorhabditis elegans] ref|NP_506758.1| Serpentine Receptor, class I family member (sri-24) [Caenorhabditis elegans] 1.0E-154
blast CAB02830 Hypothetical protein C41G6.10 [Caenorhabditis elegans] ref|NP_506760.1| Serpentine Receptor, class I family member (sri-25) [Caenorhabditis elegans] 7.0E-95
blast CAB60283 Hypothetical protein C41G6.14 [Caenorhabditis elegans] ref|NP_506759.1| Serpentine Receptor, class I family member (sri-26) [Caenorhabditis elegans] 8.0E-86
blast CAB02830 Hypothetical protein C41G6.10 [Caenorhabditis elegans] ref|NP_506760.1| Serpentine Receptor, class I family member (sri-25) [Caenorhabditis elegans] 4.0E-84
blast CAB60283 Hypothetical protein C41G6.14 [Caenorhabditis elegans] ref|NP_506759.1| Serpentine Receptor, class I family member (sri-26) [Caenorhabditis elegans] 2.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.2E-14
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.9E-48
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506758.1 7 20-39,80-102,112-134,155-172,214-236,263-285,295-317
C41G6.11 7 20-39,80-102,112-134,155-172,214-236,263-285,295-317
GENEFINDER00000010452 7 15-32,34-56,66-88,109-126,168-190,217-239,249-271
Sequence
Target Sequence 
>C. ELEGANS:181306_AT
gtcaaacattcctgattggccttataattgcgtttttgtagttttgggcttttacccatt
tctggtgactttcacattagatctgagttcggaaaatcatgaaagacagctggaattgtt
gaatgagctctacccagccctggtcgataaattccgcagtttaccggaatttcagtacta
cgttatcaatgacgggatgaaaatgtttctagcgctggccttattcggaactgttcaagc
ttttgttgtagagactaccctagtgattcacatgtacagaacactgaaatccgtgcagaa
ccagctctcctctattacaatgggaagacataaatccgcactgagaagtctcgttgctca
gtttgccaccacccctgtcgccatgctacccggtggaattgttgctctgtgcgtcgtatt
tccgacggattattcacaaaaaatcacgtggtattcaataatggtaatgacgactcactc
gactttaaatgcaattgtcatgattcttacttatccgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAACATTCCTGATTGGCCTTAT 59 461 450 Antisense
GGCTTTTACCCATTTCTGGTGACTT 466 537 496 Antisense
TACCCAGCCCTGGTCGATAAATTCC 194 649 580 Antisense
GAAAATGTTTCTAGCGCTGGCCTTA 617 353 648 Antisense
GCTGGCCTTATTCGGAACTGTTCAA 631 293 663 Antisense
ACCAGCTCTCCTCTATTACAATGGG 184 83 749 Antisense
TCCGCACTGAGAAGTCTCGTTGCTC 107 597 784 Antisense
GCTACCCGGTGGAATTGTTGCTCTG 470 303 834 Antisense
TTGCTCTGTGCGTCGTATTTCCGAC 474 703 851 Antisense
TGGTAATGACGACTCACTCGACTTT 591 549 911 Antisense
GTCATGATTCTTACTTATCCGCAGT 436 467 946 Antisense
Sequence Source Affymetrix Proprietary Database