[Home] | [Total List]

[181305_s_at]

Description ZK622.3 /REP_DB=WormBase Gene ID /WP=CE05100 /TR=Q23552 /GB=AAA81102.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 29      6grp_total > 72      4grp_total > 31      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2303
1 2 3 4 range
A 8609.5
(3)
P 		7597.8
(-1.2)
P 		7167.4
(-3)
P 		7338.8
(-2.3)
P 		1442
B 8616.4
(1.8)
P 		6786.4
(-3)
P 		7117.2
(-2.1)
P 		9089.3
(3)
P 		2303
C 8346.1
(3)
P 		7439.2
(-2.1)
P 		7286.4
(-3)
P 		7549
(-1.5)
P 		1060
avr 8524
(3) 		7274.5
(-2.6) 		7190.3
(-3) 		7992.4
(0.6) 		1334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7159
1 2 3 4 5 6 range
A 10430.8
(-2.2)
P 		10771.3
(-1.8)
P 		11793.7
(-0.6)
P 		14936.9
(3)
P 		13458.9
(1.3)
P 		9687.8
(-3)
P 		5249
B 9359.9
(-2.6)
P 		10612.3
(-1.3)
P 		12084.2
(0.3)
P 		14613
(3)
P 		13341.1
(1.6)
P 		8980.4
(-3)
P 		5633
C 8692.6
(-3)
P 		9584.5
(-2.3)
P 		14458.3
(1.8)
P 		15851.2
(3)
P 		12892.2
(0.5)
P 		9395.1
(-2.4)
P 		7159
avr 9494.4
(-2.9) 		10322.7
(-2) 		12778.7
(0.6) 		15133.7
(3) 		13230.7
(1) 		9354.4
(-3) 		5779
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2060
1 2 3 4 range
A 3134.7
(3)
P 		1649.3
(-1.3)
P 		1873.7
(-0.7)
P 		1074.3
(-3)
P 		2060
B 2747.7
(3)
P 		1676.1
(-2.9)
P 		1649.2
(-3)
P 		1936.9
(-1.4)
P 		1099
C 2762.8
(3)
P 		2138.8
(0.5)
P 		2539.5
(2.1)
P 		1272.9
(-3)
P 		1490
avr 2881.7
(3) 		1821.4
(-1.4) 		2020.8
(-0.6) 		1428
(-3) 		1454

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3498
1 2 3 4 5 6 range
A 1922.8
(-3)
P 		3830.8
(2.4)
P 		2568.4
(-1.2)
P 		3788.3
(2.2)
P 		4061.3
(3)
P 		2358.7
(-1.8)
P 		2139
B 3256.8
(-2.2)
P 		3532.4
(-1.6)
P 		2934.4
(-3)
P 		3870.5
(-0.7)
P 		5420.3
(3)
P 		3348.8
(-2)
P 		2486
C 3222
(-1.6)
P 		2924.5
(-3)
P 		3679.9
(0.6)
P 		3187.7
(-1.7)
P 		4171.7
(3)
P 		3145.1
(-1.9)
P 		1247
avr 2800.5
(-3) 		3429.2
(-0.8) 		3060.9
(-2.1) 		3615.5
(-0.2) 		4551.1
(3) 		2950.9
(-2.5) 		1751
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181305_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5868
Sequence Type Exemplar sequence
Representative Public ID ZK622.3 NCBI
Target Description ZK622.3 /REP_DB=WormBase Gene ID /WP=CE05100 /TR=Q23552 /GB=AAA81102.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062589(11), NM_182198(11), NM_062590(11), NM_182197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062589 NCBI Caenorhabditis elegans ZK622.3a (ZK622.3) mRNA, complete cds. 11/11 None
NM_182198 NCBI Caenorhabditis elegans ZK622.3d (ZK622.3) mRNA, complete cds. 11/11 None
NM_062590 NCBI Caenorhabditis elegans ZK622.3b (ZK622.3) mRNA, complete cds. 11/11 None
NM_182197 NCBI Caenorhabditis elegans ZK622.3c (ZK622.3) mRNA, complete cds. 11/11 None
SNAP00000008531 ENSEMBL cdna:SNAP chromosome:CEL140:II:5278399:5280245:-1 11/11 None
GENEFINDER00000008558 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5278399:5282479:-1 11/11 None
ZK622.3a.3 ENSEMBL cdna:known chromosome:CEL140:II:5278107:5282495:-1 gene:ZK622.3 11/11 None
ZK622.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:5278107:5282493:-1 gene:ZK622.3 11/11 None
ZK622.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:5278107:5282487:-1 gene:ZK622.3 11/11 None
ZK622.3d.3 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5282487:-1 gene:ZK622.3 11/11 None
ZK622.3c.2 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5280249:-1 gene:ZK622.3 11/11 None
ZK622.3c.1 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5282487:-1 gene:ZK622.3 11/11 None
ZK622.3d.4 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5280425:-1 gene:ZK622.3 11/11 None
ZK622.3d.1 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5280251:-1 gene:ZK622.3 11/11 None
ZK622.3b ENSEMBL cdna:known chromosome:CEL140:II:5278399:5282295:-1 gene:ZK622.3 11/11 None
ZK622.3d.2 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5282307:-1 gene:ZK622.3 11/11 None
ZK622.3c.5 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5282487:-1 gene:ZK622.3 11/11 None
ZK622.3c.3 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5280249:-1 gene:ZK622.3 11/11 None
ZK622.3d.7 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5280344:-1 gene:ZK622.3 11/11 None
ZK622.3c.4 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5282487:-1 gene:ZK622.3 11/11 None
ZK622.3d.8 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5282487:-1 gene:ZK622.3 11/11 None
ZK622.3d.5 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5280254:-1 gene:ZK622.3 11/11 None
ZK622.3d.6 ENSEMBL cdna:known chromosome:CEL140:II:5278399:5282487:-1 gene:ZK622.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5278396-5282537(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK622.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38583 Hypothetical protein ZK622.3a [Caenorhabditis elegans] ref|NP_494990.2| ZK622.3a [Caenorhabditis elegans] 0.0
blast AAL00881 Hypothetical protein ZK622.3b [Caenorhabditis elegans] ref|NP_494991.1| ZK622.3b [Caenorhabditis elegans] 0.0
blast AAO38584 Hypothetical protein ZK622.3d [Caenorhabditis elegans] ref|NP_871998.1| ZK622.3d [Caenorhabditis elegans] 0.0
blast AAN60511 Hypothetical protein ZK622.3c [Caenorhabditis elegans] ref|NP_871997.1| ZK622.3c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181305_S_AT
ataaggtgttctcatctgctcttacatctctcccatccaactcgacattcttcctctaca
ctccacgtaccgtttccccatactgccacatcaatgctcacactcttgcggaaacattca
atgccaatgtctggaacactgaaatcattccagaatactaccgcacatcactcacaaaat
caaacaacttgaaggatcagagagttcgttttggatggaatcaatctctgaccgactctg
tcacctattggcaacagaaggatgctcttttcgatgtcttcgttgccactgaattcttga
gcactgttgatgatgaaaccattcgccaacttccaaatgttatgagcgacggagccaagt
ttatcacgttggagccagttgatgaagtgaatgaggctgagatgaagcaacgcattcaag
aattgggatacacactgaagtccttcacagatgtcactgatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGGTGTTCTCATCTGCTCTTAC 490 25 938 Antisense
TGCTCACACTCTTGCGGAAACATTC 683 579 1032 Antisense
ATTCCAGAATACTACCGCACATCAC 548 7 1084 Antisense
CCGCACATCACTCACAAAATCAAAC 424 263 1098 Antisense
GAATCAATCTCTGACCGACTCTGTC 323 327 1155 Antisense
ATGCTCTTTTCGATGTCTTCGTTGC 283 39 1199 Antisense
GTCTTCGTTGCCACTGAATTCTTGA 626 467 1213 Antisense
TGATGAAACCATTCGCCAACTTCCA 540 565 1248 Antisense
AAGTTTATCACGTTGGAGCCAGTTG 160 157 1294 Antisense
GGGATACACACTGAAGTCCTTCACA 503 495 1362 Antisense
GTCCTTCACAGATGTCACTGATCAG 308 477 1377 Antisense
Sequence Source Affymetrix Proprietary Database