[Home] | [Total List]

[181304_s_at]

Description T07E3.5 /REP_DB=WormBase Gene ID /WP=CE25107 /TR=Q22311 /GB=AAA21086.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 13      6grp_highest_sub > Da      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 176.1
(0.1)
P 		139.4
(-2.4)
P 		131.1
(-3)
P 		218.3
(3)
P 		87
B 209.8
(3)
P 		155.3
(-2.3)
P 		147.9
(-3)
P 		200.6
(2.1)
P 		62
C 214.4
(-0.3)
P 		152.2
(-3)
P 		162.4
(-2.6)
P 		292.1
(3)
P 		140
avr 200.1
(0.5) 		149
(-2.9) 		147.1
(-3) 		237
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 158
(-3)
P 		212.8
(-1.3)
P 		171.2
(-2.6)
P 		194.3
(-1.9)
P 		211.4
(-1.3)
P 		349.7
(3)
P 		192
B 136.7
(-2.9)
P 		134
(-3)
P 		162.6
(-2.3)
P 		179
(-1.8)
P 		262.3
(0.3)
P 		364.3
(3)
P 		230
C 159.4
(-3)
P 		172
(-2.8)
P 		179.2
(-2.6)
P 		187
(-2.5)
P 		245.3
(-1.4)
P 		483.3
(3)
P 		324
avr 151.4
(-3) 		172.9
(-2.5) 		171
(-2.5) 		186.8
(-2.1) 		239.7
(-0.9) 		399.1
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 64.1
(3)
P 		30.3
(-3)
P 		34.3
(-2.3)
P 		32
(-2.7)
P 		34
B 66.9
(3)
P 		38.3
(-2.3)
P 		34.3
(-3)
P 		42.7
(-1.5)
P 		33
C 71
(3)
P 		43.8
(-3)
P 		56.6
(-0.2)
P 		49.2
(-1.8)
P 		27
avr 67.3
(3) 		37.5
(-3) 		41.7
(-2.2) 		41.3
(-2.2) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 29.1
(-3)
P 		75.7
(2)
P 		37.3
(-2.1)
P 		49.3
(-0.8)
P 		63.8
(0.7)
P 		85.1
(3)
P 		56
B 47.6
(-2.5)
P 		44.6
(-2.7)
P 		39.5
(-3)
P 		47.4
(-2.5)
P 		106.6
(1.2)
P 		135.8
(3)
P 		96
C 59.1
(-2)
P 		52.5
(-2.3)
P 		45.6
(-2.6)
P 		37.6
(-3)
P 		79.4
(-1)
P 		161.8
(3)
P 		124
avr 45.3
(-2.7) 		57.6
(-1.8) 		40.8
(-3) 		44.8
(-2.7) 		83.3
(-0.1) 		127.6
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181304_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6481
Sequence Type Exemplar sequence
Representative Public ID T07E3.5 NCBI
Target Description T07E3.5 /REP_DB=WormBase Gene ID /WP=CE25107 /TR=Q22311 /GB=AAA21086.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066101(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066101 NCBI Caenorhabditis elegans BRCa homolog (tumor suppressor gene Brca1) family member (brc-2) (brc-2) mRNA, complete cds. 10/11 None
SNAP00000020882 ENSEMBL cdna:SNAP chromosome:CEL140:III:6900711:6903009:-1 10/11 None
GENEFINDER00000020890 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6900711:6903009:-1 11/11 None
T07E3.5 ENSEMBL cdna:known chromosome:CEL140:III:6900518:6903038:-1 gene:T07E3.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6900709-6903008(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol brc-2
Ensembl T07E3.5
Entrez Gene 175962 Entrez gene
SwissProt Q22311 EMBL-EBI
WormBase CE32718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21086 Hypothetical protein T07E3.5 [Caenorhabditis elegans] ref|NP_498502.3| BRCa homolog (tumor suppressor gene Brca1) family member (brc-2) [Caenorhabditis elegans] gb|AAR98640.1| potential BRCA2-like protein (44.7 kD) (3H990) [Caenorhabditis elegans] 0.0
blast AAA21086 Hypothetical protein T07E3.5 [Caenorhabditis elegans] ref|NP_498502.3| BRCa homolog (tumor suppressor gene Brca1) family member (brc-2) [Caenorhabditis elegans] gb|AAR98640.1| potential BRCA2-like protein (44.7 kD) (3H990) [Caenorhabditis elegans] 1.0E-179
blast AAA21086 Hypothetical protein T07E3.5 [Caenorhabditis elegans] ref|NP_498502.3| BRCa homolog (tumor suppressor gene Brca1) family member (brc-2) [Caenorhabditis elegans] gb|AAR98640.1| potential BRCA2-like protein (44.7 kD) (3H990) [Caenorhabditis elegans] 1.0E-178
blast CAE71323 Hypothetical protein CBG18220 [Caenorhabditis briggsae] 6.0E-74
blast CAE71323 Hypothetical protein CBG18220 [Caenorhabditis briggsae] 2.0E-71
blast CAE71323 Hypothetical protein CBG18220 [Caenorhabditis briggsae] 3.0E-70
blast CAE70580 Hypothetical protein CBG17237 [Caenorhabditis briggsae] 2.0E-57
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 0.469999998807907
Sequence
Target Sequence 
>C. ELEGANS:181304_S_AT
atggtgcgaaatccggtatccgacgccattcaattgccaagaagccgttttgcatcaaac
ccagatttatccacgaattgtcagacacgaaaatcaaaaaaacagttgtccaagttaact
tactcgatttaaatttggatttttatgcaggatgttcgaaatgcaaacactctctcccag
aagcagcgaatcaatgcgagttttgtaaggattcccaaggaaaatctgaattgtcgatgt
attctagatttttgggaagtatcgttacaaaaaaacttcaggtgcgagttatggacttct
ccggtcaaatgtttatcaatgtgactacaaaaaatatgaagaaattactcgatttgttag
gatatgaaggatttgacaattggttccgattcaaagacccccaggaacgacaaaactatg
tgttccgccctgttatggttgaaatcgaaaaatcgaatgatgaatgggaatgcactgacg
tggcagaagtcgactggaaagattttggctcttacttgaaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTGCGAAATCCGGTATCCGACG 243 51 629 Antisense
TCCGACGCCATTCAATTGCCAAGAA 222 595 647 Antisense
TTGCCAAGAAGCCGTTTTGCATCAA 273 701 662 Antisense
GTTCGAAATGCAAACACTCTCTCCC 53 443 782 Antisense
CTCTCTCCCAGAAGCAGCGAATCAA 345 231 798 Antisense
AGGTGCGAGTTATGGACTTCTCCGG 479 1 908 Antisense
ACTTCTCCGGTCAAATGTTTATCAA 617 101 923 Antisense
GGATTTGACAATTGGTTCCGATTCA 359 509 997 Antisense
ACGACAAAACTATGTGTTCCGCCCT 72 91 1035 Antisense
GTTCCGCCCTGTTATGGTTGAAATC 451 441 1050 Antisense
AGATTTTGGCTCTTACTTGAAACAT 623 63 1128 Antisense
Sequence Source Affymetrix Proprietary Database