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[181302_s_at]

Description F14D2.3 /REP_DB=WormBase Gene ID /WP=CE16978 /TR=O44808 /GB=AAB94957.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 09      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 39.2
(-3)
A 		60.3
(-2.3)
A 		46.7
(-2.8)
A 		223.4
(3)
P 		184
B 8
(-3)
A 		64.7
(0.2)
P 		42.5
(-1.1)
A 		115.1
(3)
P 		107
C 55.8
(-2.1)
A 		31.7
(-3)
A 		34.9
(-2.9)
M 		196.2
(3)
P 		165
avr 34.3
(-3) 		52.2
(-2.3) 		41.4
(-2.7) 		178.2
(3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 814
1 2 3 4 5 6 range
A 79.8
(-2.4)
A 		25.8
(-3)
A 		70.7
(-2.5)
P 		117.9
(-2)
P 		468.5
(1.9)
P 		569.5
(3)
P 		544
B 32.8
(-3)
A 		41.4
(-2.9)
A 		57.2
(-2.8)
M 		129.7
(-2.3)
P 		570.8
(1)
P 		840
(3)
P 		807
C 48
(-2.8)
A 		53.8
(-2.8)
P 		31.7
(-3)
A 		133.6
(-2)
P 		368.3
(0.2)
P 		672.3
(3)
P 		641
avr 53.5
(-2.9) 		40.3
(-3) 		53.2
(-2.9) 		127.1
(-2.2) 		469.2
(0.9) 		693.9
(3) 		654
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 14.3
(-2.4)
A 		13.1
(-2.7)
A 		12.2
(-3)
A 		32.7
(3)
P 		21
B 2.6
(-3)
A 		16
(0.7)
P 		9.9
(-1)
A 		24.5
(3)
P 		22
C 18.5
(-0.7)
A 		9.1
(-3)
A 		12.2
(-2.2)
M 		33.1
(3)
P 		24
avr 11.8
(-2.9) 		12.7
(-2.6) 		11.4
(-3) 		30.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 14.7
(-2.8)
A 		9.2
(-3)
A 		15.4
(-2.7)
P 		29.9
(-2.1)
P 		141.4
(3)
P 		138.7
(2.9)
P 		132
B 11.4
(-3)
A 		13.8
(-3)
A 		13.9
(-3)
M 		34.4
(-2.5)
P 		231.9
(1.4)
P 		313.2
(3)
P 		302
C 17.8
(-2.7)
A 		16.4
(-2.8)
P 		8.1
(-3)
A 		26.9
(-2.5)
P 		119.2
(0.1)
P 		225.1
(3)
P 		217
avr 14.6
(-2.9) 		13.1
(-3) 		12.5
(-3) 		30.4
(-2.5) 		164.2
(1.3) 		225.7
(3) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181302_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5866
Sequence Type Exemplar sequence
Representative Public ID F14D2.3 NCBI
Target Description F14D2.3 /REP_DB=WormBase Gene ID /WP=CE16978 /TR=O44808 /GB=AAB94957.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062111(11), NM_001026914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062111 NCBI Caenorhabditis elegans F14D2.12 (F14D2.12) mRNA, complete cds. 11/11 A 
NM_001026914 NCBI Caenorhabditis elegans F14D2.4a (F14D2.4) mRNA, complete cds. 11/11 None
SNAP00000037061 ENSEMBL cdna:SNAP chromosome:CEL140:II:3345284:3346366:-1 11/11 None
GENEFINDER00000037084 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3358255:3358905:1 11/11 None
GENEFINDER00000037091 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3345284:3346366:-1 11/11 None
F14D2.12 ENSEMBL cdna:known chromosome:CEL140:II:3345275:3346366:-1 gene:F14D2.12 11/11 A 
F14D2.4a ENSEMBL cdna:known chromosome:CEL140:II:3350254:3358965:1 gene:F14D2.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182464 5/11 Cross Hyb Matching Probes None
SNAP00000014005 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014019 5/11 Cross Hyb Matching Probes None
Y108F1.5 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
184454 2 1 NM_001026914 181302_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3358178-3358904(+) 99.28 100.0
chrII:3345282-3351484(-) 97.36 98.08
Public Domain and Genome References
Gene Title
Gene Symbol bath-30
Ensembl F14D2.12
F14D2.4
Entrez Gene 173678 Entrez gene
SwissProt Q8MXH8 EMBL-EBI
WormBase CE31786 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_001022085 F14D2.4a [Caenorhabditis elegans] gb|AAB94962.2| Hypothetical protein F14D2.4a [Caenorhabditis elegans] 0.0
blast NP_494512 F14D2.12 [Caenorhabditis elegans] gb|AAM98035.1| Hypothetical protein F14D2.12 [Caenorhabditis elegans] 1.0E-180
blast T32791 hypothetical protein F14D2.8 - Caenorhabditis elegans 1.0E-174
blast NP_494512 F14D2.12 [Caenorhabditis elegans] gb|AAM98035.1| Hypothetical protein F14D2.12 [Caenorhabditis elegans] 1.0E-171
blast NP_001022085 F14D2.4a [Caenorhabditis elegans] gb|AAB94962.2| Hypothetical protein F14D2.4a [Caenorhabditis elegans] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.4E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.6E-29
Pfam IPR002083 EMBL-EBI MATH 1.4E-35
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.3E-31
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.8E-22
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.9E-6
Sequence
Target Sequence 
>C. ELEGANS:181302_S_AT
ctgttgaaggaatccttttgctggctgatatgtaccaaacaccgcttgtctccgagcttt
gcgaggattttctcattcaaaccaccggaaaaacctacagaaagaagctacaaatggcga
taaaatttaatttggagaatttgaagcaattctgcatttcaatgatcaaatctcccttcg
atcttcgttctatgatcccatcggacatttccagcatcgatcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTTGAAGGAATCCTTTTGCTGGC 276 237 158 Antisense
TCCTTTTGCTGGCTGATATGTACCA 80 593 170 Antisense
TTGTCTCCGAGCTTTGCGAGGATTT 567 705 203 Antisense
GAGCTTTGCGAGGATTTTCTCATTC 171 389 211 Antisense
GATTTTCTCATTCAAACCACCGGAA 145 429 223 Antisense
GCATTTCAATGATCAAATCTCCCTT 330 307 311 Antisense
ATGATCAAATCTCCCTTCGATCTTC 696 45 319 Antisense
CGATCTTCGTTCTATGATCCCATCG 412 249 336 Antisense
TTCGTTCTATGATCCCATCGGACAT 129 695 341 Antisense
TGATCCCATCGGACATTTCCAGCAT 525 565 350 Antisense
TCGGACATTTCCAGCATCGATCACT 410 607 358 Antisense
Sequence Source Affymetrix Proprietary Database