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[181301_at]

Description F14D2.3 /REP_DB=WormBase Gene ID /WP=CE16978 /TR=O44808 /GB=AAB94957.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 35      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 15.9
(-2.9)
A 		72.5
(3)
A 		14.5
(-3)
A 		17.7
(-2.7)
A 		58
B 17.3
(3)
A 		6.5
(-3)
A 		14.3
(1.3)
A 		16
(2.3)
A 		11
C 16
(-2.8)
A 		62.6
(1.3)
A 		13.2
(-3)
A 		81.9
(3)
A 		69
avr 16.4
(-2.6) 		47.2
(3) 		14
(-3) 		38.5
(1.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 33.9
(3)
A 		3
(-3)
A 		13.5
(-1)
A 		13.7
(-0.9)
A 		11.9
(-1.3)
A 		15.4
(-0.6)
A 		31
B 9.6
(2.6)
A 		10
(3)
A 		9.5
(2.5)
A 		6.4
(-0.7)
A 		4.2
(-3)
A 		8.2
(1.1)
A 		6
C 12.1
(1.8)
A 		14.7
(3)
A 		5.8
(-1.3)
A 		2.2
(-3)
A 		11.2
(1.3)
A 		8.5
(0)
A 		13
avr 18.5
(3) 		9.2
(-2) 		9.6
(-1.8) 		7.4
(-3) 		9.1
(-2.1) 		10.7
(-1.2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.8
(-1.5)
A 		15.7
(3)
A 		3.8
(-2.5)
A 		2.6
(-3)
A 		13
B 5.5
(3)
A 		1.6
(-3)
A 		3.3
(-0.4)
A 		3.4
(-0.2)
A 		4
C 5.3
(-2.7)
A 		18
(3)
A 		4.6
(-3)
A 		13.8
(1.1)
A 		13
avr 5.5
(-1.8) 		11.8
(3) 		3.9
(-3) 		6.6
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.3
(3)
A 		1.1
(-3)
A 		2.9
(-0.9)
A 		3.5
(-0.2)
A 		3.6
(-0.1)
A 		3.8
(0.1)
A 		5
B 3.3
(3)
A 		3.3
(3)
A 		2.3
(-0.8)
A 		1.7
(-3)
A 		1.7
(-3)
A 		3.1
(2.3)
A 		2
C 4.5
(3)
A 		4.5
(3)
A 		1.5
(-1.4)
A 		0.4
(-3)
A 		3.6
(1.7)
A 		2.9
(0.7)
A 		4
avr 4.7
(3) 		3
(-0.6) 		2.2
(-2.4) 		1.9
(-3) 		3
(-0.6) 		3.3
(-0) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5866
Sequence Type Exemplar sequence
Representative Public ID F14D2.3 NCBI
Target Description F14D2.3 /REP_DB=WormBase Gene ID /WP=CE16978 /TR=O44808 /GB=AAB94957.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062111, NM_001026914
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026914 NCBI Caenorhabditis elegans F14D2.4a (F14D2.4) mRNA, complete cds. None
GENEFINDER00000037084 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3358255:3358905:1 None
F14D2.4a ENSEMBL cdna:known chromosome:CEL140:II:3350254:3358965:1 gene:F14D2.4 A 
SNAP00000037061 ENSEMBL cdna:SNAP chromosome:CEL140:II:3345284:3346366:-1 None
GENEFINDER00000037091 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3345284:3346366:-1 None
NM_062111 NCBI Caenorhabditis elegans F14D2.12 (F14D2.12) mRNA, complete cds. A 
F14D2.12 ENSEMBL cdna:known chromosome:CEL140:II:3345275:3346366:-1 gene:F14D2.12 A 
GENEFINDER00000037084 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3358255:3358905:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3358178-3358904(+) 99.28 100.0
chrII:3345282-3351484(-) 97.36 98.08
Public Domain and Genome References
Gene Title
Gene Symbol bath-30
Ensembl F14D2.12
F14D2.4
Entrez Gene 173678 Entrez gene
SwissProt Q8MXH8 EMBL-EBI
WormBase CE31786 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_001022085 F14D2.4a [Caenorhabditis elegans] gb|AAB94962.2| Hypothetical protein F14D2.4a [Caenorhabditis elegans] 0.0
blast NP_494512 F14D2.12 [Caenorhabditis elegans] gb|AAM98035.1| Hypothetical protein F14D2.12 [Caenorhabditis elegans] 1.0E-180
blast T32791 hypothetical protein F14D2.8 - Caenorhabditis elegans 1.0E-174
blast NP_494512 F14D2.12 [Caenorhabditis elegans] gb|AAM98035.1| Hypothetical protein F14D2.12 [Caenorhabditis elegans] 1.0E-171
blast NP_001022085 F14D2.4a [Caenorhabditis elegans] gb|AAB94962.2| Hypothetical protein F14D2.4a [Caenorhabditis elegans] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.4E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.6E-29
Pfam IPR002083 EMBL-EBI MATH 1.4E-35
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.3E-31
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.8E-22
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.9E-6
Sequence
Target Sequence 
>C. ELEGANS:181301_AT
tccctggaaaaggcctccgcaatatcgattgttaaagggacaccgactgttcatcgaatg
ggtcccgccgcgattgtccatttcgagcgcttttcgcgatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTGGAAAAGGCCTCCGCAATAT 690 585 31 Antisense
GAAAAGGCCTCCGCAATATCGATTG 88 353 37 Antisense
AGGCCTCCGCAATATCGATTGTTAA 124 49 41 Antisense
ATCGATTGTTAAAGGGACACCGACT 569 33 54 Antisense
GTTAAAGGGACACCGACTGTTCATC 346 445 61 Antisense
AAGGGACACCGACTGTTCATCGAAT 305 159 65 Antisense
GACACCGACTGTTCATCGAATGGGT 21 369 69 Antisense
CGACTGTTCATCGAATGGGTCCCGC 704 251 74 Antisense
CGCGATTGTCCATTTCGAGCGCTTT 363 255 99 Antisense
TCCATTTCGAGCGCTTTTCGCGATT 667 589 107 Antisense
CATTTCGAGCGCTTTTCGCGATTTT 459 215 109 Antisense
Sequence Source Affymetrix Proprietary Database