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[181300_at]

Description C26E6.1 /REP_DB=WormBase Gene ID /WP=CE01157 /TR=Q18226 /GB=AAA21155.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 48.3
(0.4)
A 		8.6
(-3)
A 		13.3
(-2.6)
A 		79.1
(3)
A 		71
B 24.2
(-1.9)
A 		68.2
(3)
A 		14.5
(-3)
A 		47.5
(0.7)
A 		54
C 5.8
(-3)
A 		6.6
(-3)
A 		7.3
(-2.9)
A 		112.3
(3)
A 		107
avr 26.1
(-1.7) 		27.8
(-1.6) 		11.7
(-3) 		79.6
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 35.4
(3)
A 		5.5
(-3)
A 		26.8
(1.3)
A 		14
(-1.3)
A 		8.4
(-2.4)
A 		29.2
(1.8)
A 		30
B 31.7
(1.1)
A 		24.9
(-0.1)
A 		7.7
(-3)
A 		24.9
(-0.1)
A 		7.5
(-3)
A 		43
(3)
A 		36
C 6.1
(-3)
A 		15.9
(-1.5)
A 		6.6
(-2.9)
A 		9.7
(-2.5)
A 		15.6
(-1.6)
A 		45.7
(3)
A 		40
avr 24.4
(-0.1) 		15.4
(-2) 		13.7
(-2.3) 		16.2
(-1.8) 		10.5
(-3) 		39.3
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.6
(3)
A 		1.9
(-3)
A 		3.5
(-2.4)
A 		11.6
(0.7)
A 		16
B 7.7
(-1.1)
A 		16.8
(3)
A 		3.4
(-3)
A 		10.1
(0)
A 		13
C 1.9
(-3)
A 		1.9
(-3)
A 		2.6
(-2.8)
A 		18.9
(3)
A 		17
avr 9.1
(0.4) 		6.9
(-0.8) 		3.2
(-3) 		13.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.5
(2.3)
A 		1.9
(-3)
A 		5.8
(1.5)
A 		3.5
(-1.2)
A 		2.5
(-2.3)
A 		7.1
(3)
A 		5
B 11
(0.9)
A 		8.3
(-0.3)
A 		1.9
(-3)
A 		6.6
(-1)
A 		3.1
(-2.5)
A 		16
(3)
A 		14
C 2.3
(-2.7)
A 		4.8
(-1.6)
A 		1.7
(-3)
A 		2
(-2.9)
A 		5.1
(-1.5)
A 		15.3
(3)
A 		14
avr 6.6
(-0.8) 		5
(-1.8) 		3.1
(-3) 		4
(-2.4) 		3.6
(-2.7) 		12.8
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6402
Sequence Type Exemplar sequence
Representative Public ID C26E6.1 NCBI
Target Description C26E6.1 /REP_DB=WormBase Gene ID /WP=CE01157 /TR=Q18226 /GB=AAA21155.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065649 NCBI Caenorhabditis elegans C26E6.1 (C26E6.1) mRNA, complete cds. 11/11 None
C26E6.1 ENSEMBL cdna:known chromosome:CEL140:III:4956850:4957498:1 gene:C26E6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001011 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4956849-4957498(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26E6.1
Entrez Gene 182941 Entrez gene
SwissProt Q18226 EMBL-EBI
WormBase CE01157 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA21155 Hypothetical protein C26E6.1 [Caenorhabditis elegans] ref|NP_498050.1| C26E6.1 [Caenorhabditis elegans] 1.0E-111
blast CAD29326 Hypothetical protein VY10G11R.1 [Caenorhabditis elegans] ref|NP_741498.1| VY10G11R.1 [Caenorhabditis elegans] 9.0E-24
blast AAF36040 Hypothetical protein Y73B6A.1 [Caenorhabditis elegans] ref|NP_501030.2| Y73B6A.1 [Caenorhabditis elegans] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:181300_AT
ggagtcgctttaaagctggtccctcgggttaatgcgacatcaaaaaatggatgccttaag
gaggtggacaatgcaacgaaaatcaattcaatatgtgaaagtgctccgaacacagcaaag
cttctgcactcttgcatcttcccgaagatcccaacaactgtctgttcacaatattcatta
tcgccacataagactcatttcgcgatgtttatggaaatgtgtggaagtgagctgactgga
agaatcaagtttaaatcagacgaacaagtcaaaagtgtaatatgccaaatcatttttttc
ttggtcgctgctcgaaagaagagtggatactcgcacaatgacttccacaaaagaaacatt
ttaattaatgatacgagaaaggagacaatttgttacaaagtcgaaggcacggagtatgtt
ttgaagacgagtggagtttgggtaactgttatcgattacgagggaaacacgttcgatgat
gaaggtaaccgagcagatttcctccgtctggatggaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTCGCTTTAAAGCTGGTCCCTC 212 507 19 Antisense
CTGGTCCCTCGGGTTAATGCGACAT 106 241 34 Antisense
AACACAGCAAAGCTTCTGCACTCTT 591 135 127 Antisense
CACTCTTGCATCTTCCCGAAGATCC 411 197 145 Antisense
GATCCCAACAACTGTCTGTTCACAA 108 417 165 Antisense
GTTCACAATATTCATTATCGCCACA 442 445 182 Antisense
TATCGCCACATAAGACTCATTTCGC 655 657 197 Antisense
TTTTTTTCTTGGTCGCTGCTCGAAA 220 675 311 Antisense
GGATACTCGCACAATGACTTCCACA 674 509 343 Antisense
AGGTAACCGAGCAGATTTCCTCCGT 529 1 501 Antisense
GATTTCCTCCGTCTGGATGGAATCT 232 425 514 Antisense
Sequence Source Affymetrix Proprietary Database