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[181299_s_at]

Description R05H10.3 /REP_DB=WormBase Gene ID /WP=CE25970 /TR=O62326 /GB=CAC14398.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 45      6grp_total > 88      4grp_total > 51      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 155.4
(-3)
P 		218.5
(3)
P 		169.3
(-1.7)
P 		170.2
(-1.6)
P 		63
B 176.9
(-0.3)
P 		221.1
(2.5)
P 		229.9
(3)
P 		132.5
(-3)
P 		97
C 195.7
(3)
M 		178.5
(0.8)
P 		149
(-3)
P 		181.3
(1.1)
P 		47
avr 176
(-1) 		206
(3) 		182.7
(-0.1) 		161.3
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 186.2
(-1.5)
P 		132.1
(-3)
P 		163.5
(-2.1)
P 		143.7
(-2.7)
P 		277.2
(1)
P 		347.3
(3)
P 		215
B 158.8
(-2.9)
P 		157.1
(-3)
P 		183.9
(-2.1)
M 		183.1
(-2.2)
P 		204.9
(-1.4)
P 		341.1
(3)
P 		184
C 152.9
(-2.5)
A 		154.4
(-2.5)
M 		162.8
(-2.2)
A 		137.6
(-3)
A 		232.2
(-0)
P 		326.8
(3)
P 		189
avr 166
(-2.4) 		147.9
(-3) 		170.1
(-2.3) 		154.8
(-2.8) 		238.1
(-0.2) 		338.4
(3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 56.6
(3)
P 		47.4
(1.3)
P 		44.2
(0.7)
P 		24.9
(-3)
P 		32
B 56.4
(3)
P 		54.6
(2.6)
P 		53.3
(2.3)
P 		28.2
(-3)
P 		28
C 64.8
(3)
M 		51.3
(0.6)
P 		51.9
(0.7)
P 		30.6
(-3)
P 		34
avr 59.3
(3) 		51.1
(1.4) 		49.8
(1.2) 		27.9
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 34.3
(-3)
P 		47
(-1.5)
P 		35.6
(-2.8)
P 		36.4
(-2.7)
P 		83.7
(2.9)
P 		84.6
(3)
P 		50
B 55.2
(-2.2)
P 		52.3
(-2.4)
P 		44.7
(-3)
M 		48.5
(-2.7)
P 		83.2
(-0.2)
P 		127.2
(3)
P 		83
C 56.7
(-0.9)
A 		47.1
(-1.6)
M 		41.4
(-2)
A 		27.7
(-3)
A 		75.1
(0.5)
P 		109.4
(3)
P 		82
avr 48.7
(-2) 		48.8
(-2) 		40.6
(-2.7) 		37.5
(-3) 		80.7
(0.7) 		107.1
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181299_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2967
Sequence Type Exemplar sequence
Representative Public ID R05H10.3 NCBI
Target Description R05H10.3 /REP_DB=WormBase Gene ID /WP=CE25970 /TR=O62326 /GB=CAC14398.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027098(11), NM_001027099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027098 NCBI Caenorhabditis elegans R05H10.3a (R05H10.3) mRNA, complete cds. 11/11 None
NM_001027099 NCBI Caenorhabditis elegans R05H10.3b (R05H10.3) mRNA, complete cds. 11/11 None
SNAP00000008825 ENSEMBL cdna:SNAP chromosome:CEL140:II:14872490:14882646:1 11/11 None
GENEFINDER00000008828 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14878504:14882646:1 11/11 None
R05H10.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:14869833:14882928:1 gene:R05H10.3 11/11 None
R05H10.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:14869834:14882917:1 gene:R05H10.3 11/11 None
R05H10.3b ENSEMBL cdna:known chromosome:CEL140:II:14869834:14882646:1 gene:R05H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14869835-14882643(+) 100.0 100.0
Public Domain and Genome References
Ensembl R05H10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14398 Hypothetical protein R05H10.3a [Caenorhabditis elegans] emb|CAB05580.2| Hypothetical protein R05H10.3a [Caenorhabditis elegans] ref|NP_001022269.1| R05H10.3a [Caenorhabditis elegans] 0.0
blast CAH04736 Hypothetical protein R05H10.3b [Caenorhabditis elegans] emb|CAH04748.1| Hypothetical protein R05H10.3b [Caenorhabditis elegans] ref|NP_001022270.1| R05H10.3b [Caenorhabditis elegans] 0.0
blast CAE73437 Hypothetical protein CBG20880 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.4E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 6.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008828 1 28-50
Sequence
Target Sequence 
>C. ELEGANS:181299_S_AT
attgcatacattttcccgtgctttttgccggaaaatgaagacatccaagccctatcacaa
aacaaccgtaactccccatacgtgatgtgctcggtgctgaaactaatgcgtgatcattac
ggaggaatcccggaagatctcattcgacacttccttctcgaatcggccgatcctgctcca
aaactgatttgcatgaagtacctaagcaacccggactttttcgattcgctgtctgcagag
gagctggagaaatatctcgacgctgggctgtccgatgatggaatggagatgcgacaggag
gcgataaagctcgcagaaaaagctctcggaaaggctcagctcaaggatcgggtgatcgat
gtgatcacagagtataaaaatgatcgctggctgagtcgctatgtccgacgtctcctttgc
gaagagctcgcaccgcagccggaaaacgagtcgattctaattctccgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCATACATTTTCCCGTGCTTTT 204 7 1261 Antisense
AACCGTAACTCCCCATACGTGATGT 61 143 1324 Antisense
TACGTGATGTGCTCGGTGCTGAAAC 45 649 1339 Antisense
AATCCCGGAAGATCTCATTCGACAC 577 167 1386 Antisense
CCGATCCTGCTCCAAAACTGATTTG 477 263 1427 Antisense
ACTTTTTCGATTCGCTGTCTGCAGA 389 103 1475 Antisense
AGAAATATCTCGACGCTGGGCTGTC 625 71 1508 Antisense
GAAAGGCTCAGCTCAAGGATCGGGT 179 359 1589 Antisense
AATGATCGCTGGCTGAGTCGCTATG 166 165 1639 Antisense
GACGTCTCCTTTGCGAAGAGCTCGC 362 377 1667 Antisense
ACGAGTCGATTCTAATTCTCCGTCA 375 93 1706 Antisense
Sequence Source Affymetrix Proprietary Database