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[181296_at]

Description K04F1.7 /REP_DB=WormBase Gene ID /WP=CE19958 /TR=Q9TXL1 /GB=AAC78166.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 11      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 11.7
(-3)
A 		22
(-2.3)
A 		23.7
(-2.1)
A 		95.6
(3)
A 		84
B 46.1
(1.3)
A 		43
(0.9)
A 		12.1
(-3)
A 		59.8
(3)
A 		48
C 15.8
(-2.4)
A 		4
(-2.9)
A 		1.7
(-3)
A 		142.1
(3)
M 		140
avr 24.5
(-2.2) 		23
(-2.3) 		12.5
(-3) 		99.2
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 58.6
(3)
A 		25.3
(-0.5)
A 		42.8
(1.4)
A 		1.1
(-3)
A 		3
(-2.8)
A 		1.3
(-3)
A 		58
B 2.7
(-2.7)
A 		39.2
(3)
A 		8.4
(-1.8)
A 		3.3
(-2.6)
A 		6
(-2.2)
A 		0.7
(-3)
A 		39
C 3.4
(-2.8)
A 		41.7
(3)
A 		10.8
(-1.7)
A 		4.8
(-2.6)
A 		1.9
(-3)
A 		22.6
(0.1)
A 		40
avr 21.6
(0.4) 		35.4
(3) 		20.7
(0.3) 		3.1
(-3) 		3.6
(-2.9) 		8.2
(-2.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.3
(-3)
A 		4.8
(-2.7)
A 		6.2
(-1.8)
A 		14
(3)
A 		10
B 14.7
(3)
A 		10.6
(0.9)
A 		2.8
(-3)
A 		12.7
(2)
A 		12
C 5.2
(-1.8)
A 		1.2
(-2.8)
A 		0.6
(-3)
A 		24
(3)
M 		23
avr 8.1
(-0.9) 		5.5
(-2) 		3.2
(-3) 		16.9
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.8
(3)
A 		9
(2)
A 		9.3
(2.1)
A 		0.3
(-3)
A 		0.9
(-2.7)
A 		0.3
(-3)
A 		11
B 0.9
(-2.7)
A 		13
(3)
A 		2
(-2.2)
A 		0.9
(-2.7)
A 		2.5
(-2)
A 		0.3
(-3)
A 		13
C 1.2
(-2.7)
A 		12.7
(3)
A 		2.8
(-1.9)
A 		1
(-2.8)
A 		0.6
(-3)
A 		7.6
(0.5)
A 		12
avr 4.3
(-1) 		11.6
(3) 		4.7
(-0.8) 		0.7
(-3) 		1.3
(-2.7) 		2.7
(-1.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15192
Sequence Type Exemplar sequence
Representative Public ID K04F1.7 NCBI
Target Description K04F1.7 /REP_DB=WormBase Gene ID /WP=CE19958 /TR=Q9TXL1 /GB=AAC78166.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071075 NCBI Caenorhabditis elegans K04F1.7 (K04F1.7) mRNA, complete cds. 11/11 None
GENEFINDER00000011969 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1668362:1671405:1 11/11 None
K04F1.7 ENSEMBL cdna:known chromosome:CEL140:V:1668335:1669618:1 gene:K04F1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011965 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1668334-1669618(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F1.7
Entrez Gene 186993 Entrez gene
SwissProt Q9TXL1 EMBL-EBI
WormBase CE19958 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78166 Hypothetical protein K04F1.7 [Caenorhabditis elegans] ref|NP_503476.1| K04F1.7 [Caenorhabditis elegans] 0.0
blast AAC78166 Hypothetical protein K04F1.7 [Caenorhabditis elegans] ref|NP_503476.1| K04F1.7 [Caenorhabditis elegans] 1.0E-178
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 4.0E-81
blast AAC78165 Hypothetical protein K04F1.6 [Caenorhabditis elegans] ref|NP_503477.1| K04F1.6 [Caenorhabditis elegans] 4.0E-79
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 9.0E-71
blast AAC78165 Hypothetical protein K04F1.6 [Caenorhabditis elegans] ref|NP_503477.1| K04F1.6 [Caenorhabditis elegans] 2.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.0E-10
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.1E-12
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-11
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.1E-12
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:181296_AT
caataaactctaattctacccaaagacaaattgaaatggtaatatacagtatgccttcta
acttttgcatttccatacaagaaatatcaaacttcattcaaaactcgaacctttacatgg
gagatttgccaaaaacattttgcccaatcacatccgactttatatctggagaaaaggtgt
gccaattcggcatagacgccacaactttaagaaatatgacatcgaattgtgttcgagttt
ctgggaatattacgatagaagctggtgatgaagagtttgtatacaagttgaagtcgatga
agtatttatttggaagtttaaagatttttaatgttaacttaactcaagttgactttctca
gcagtttagaatacgtggttacattggacaataagccagccatagaaatgttgtcgaatc
attttgttttgaactttactctaccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATAAACTCTAATTCTACCCAAAG 674 173 518 Antisense
ATACAGTATGCCTTCTAACTTTTGC 4 25 561 Antisense
CTAACTTTTGCATTTCCATACAAGA 466 227 575 Antisense
TCAAAACTCGAACCTTTACATGGGA 682 627 615 Antisense
AAACATTTTGCCCAATCACATCCGA 87 129 650 Antisense
GCCCAATCACATCCGACTTTATATC 394 287 659 Antisense
GGTGTGCCAATTCGGCATAGACGCC 323 499 693 Antisense
GGCATAGACGCCACAACTTTAAGAA 237 535 706 Antisense
GAATTGTGTTCGAGTTTCTGGGAAT 641 323 741 Antisense
TCAAGTTGACTTTCTCAGCAGTTTA 144 631 861 Antisense
TTGTTTTGAACTTTACTCTACCAAG 529 673 941 Antisense
Sequence Source Affymetrix Proprietary Database