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[181295_at]

Description T07E3.3 /REP_DB=WormBase Gene ID /WP=CE01384 /TR=Q22312 /GB=AAA21082.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 10.9
(-3)
A 		14.8
(-2.9)
A 		17.1
(-2.8)
A 		180.8
(3)
M 		170
B 19.7
(-2.8)
A 		18.3
(-2.8)
A 		9.9
(-3)
A 		318.4
(3)
P 		309
C 11.2
(-3)
A 		23.7
(-2.7)
A 		11.4
(-3)
A 		281
(3)
P 		270
avr 13.9
(-3) 		18.9
(-2.9) 		12.8
(-3) 		260.1
(3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 64.2
(-2.6)
A 		52.2
(-3)
A 		150.7
(0.4)
A 		149.5
(0.4)
A 		226.3
(3)
A 		164.5
(0.9)
A 		174
B 51.2
(-3)
A 		87.7
(-1.7)
A 		119.9
(-0.5)
A 		196.5
(2.2)
A 		197.7
(2.3)
A 		218.5
(3)
A 		167
C 64.1
(-3)
A 		74.9
(-2.6)
A 		90.4
(-1.9)
A 		187.6
(2.1)
A 		79.2
(-2.4)
A 		210.1
(3)
A 		146
avr 59.8
(-3) 		71.6
(-2.5) 		120.3
(-0.4) 		177.9
(2.1) 		167.7
(1.7) 		197.7
(3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 4
(-2.8)
A 		3.2
(-3)
A 		4.5
(-2.7)
A 		26.5
(3)
M 		23
B 6.3
(-2.6)
A 		4.5
(-2.8)
A 		2.3
(-3)
A 		67.8
(3)
P 		66
C 3.7
(-3)
A 		6.8
(-2.6)
A 		4
(-3)
A 		47.4
(3)
P 		44
avr 4.7
(-2.8) 		4.8
(-2.8) 		3.6
(-3) 		47.2
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 11.8
(-3)
A 		18.6
(-2.3)
A 		32.8
(-0.8)
A 		37.9
(-0.2)
A 		68.3
(3)
A 		40
(-0)
A 		57
B 17.8
(-3)
A 		29.2
(-1.9)
A 		29.1
(-1.9)
A 		52
(0.2)
A 		80.3
(2.9)
A 		81.5
(3)
A 		64
C 23.7
(-2.9)
A 		22.8
(-3)
A 		23
(-3)
A 		37.7
(-1.1)
A 		25.6
(-2.6)
A 		70.3
(3)
A 		48
avr 17.8
(-3) 		23.5
(-2.3) 		28.3
(-1.6) 		42.5
(0.2) 		58.1
(2.2) 		63.9
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6583
Sequence Type Exemplar sequence
Representative Public ID T07E3.3 NCBI
Target Description T07E3.3 /REP_DB=WormBase Gene ID /WP=CE01384 /TR=Q22312 /GB=AAA21082.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066102 NCBI Caenorhabditis elegans T07E3.3 (T07E3.3) mRNA, complete cds. 11/11 None
T07E3.3 ENSEMBL cdna:known chromosome:CEL140:III:6903827:6905986:1 gene:T07E3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020883 5/11 Cross Hyb Matching Probes None
GENEFINDER00000020892 5/11 Cross Hyb Matching Probes None
GENEFINDER00000020893 6/11 Cross Hyb Matching Probes None
SNAP00000020884 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6903825-6905985(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07E3.3
Entrez Gene 188233 Entrez gene
SwissProt Q22312 EMBL-EBI
WormBase CE01384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21082 Hypothetical protein T07E3.3 [Caenorhabditis elegans] ref|NP_498503.1| T07E3.3 [Caenorhabditis elegans] 1.0E-162
blast CAE71324 Hypothetical protein CBG18221 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:181295_AT
acagcggtagcacgtggatcggtcatccctcagctgttcctcacttcaatccgtgaacaa
tacccagacctctatgaaaaagcaattcatcacttgggaaaacggctctgggagcagcga
cttccagttcactacgggtgtcacatgtctacagtatgccgtgaacttggaatctcattc
aaaatcgcagaagacattgtggctcgtctctcatctccagaaaatcgatcgatactacac
aaaaattgcaaagaagccgtggatttcaaacttactgaagcacccggattaatcttgtta
actgatgaaggagacactataaaaatatttgtatatatcatcataacgatttccttgatg
actgcgtgcaaaaacaagaaatcgaaatcttctcgatcagctgaagctgctccaagcgtt
cagagccttctgagtccaagtatccctaaaagccgcaccttcaaaactatcaggatcttc
aactcctactcatccaatccaaatacagttatggctccagctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCGGTAGCACGTGGATCGGTCA 445 107 358 Antisense
CTGTTCCTCACTTCAATCCGTGAAC 584 237 391 Antisense
GACTTCCAGTTCACTACGGGTGTCA 509 369 476 Antisense
GGGTGTCACATGTCTACAGTATGCC 135 497 493 Antisense
AGAAGACATTGTGGCTCGTCTCTCA 253 75 546 Antisense
CGATTTCCTTGATGACTGCGTGCAA 284 249 704 Antisense
GAAGCTGCTCCAAGCGTTCAGAGCC 424 343 760 Antisense
CAGAGCCTTCTGAGTCCAAGTATCC 581 205 778 Antisense
GTCCAAGTATCCCTAAAAGCCGCAC 168 471 791 Antisense
ATCAGGATCTTCAACTCCTACTCAT 492 29 826 Antisense
AAATACAGTTATGGCTCCAGCTCCG 702 115 858 Antisense
Sequence Source Affymetrix Proprietary Database