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[181294_at] 7TM chemoreceptor, srw family

Description F20E11.6 /REP_DB=WormBase Gene ID /WP=CE18615 /TR=Q9XV86 /GB=CAB04139.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 18      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 41.1
(-0.2)
A 		55.6
(3)
A 		28
(-3)
A 		28.7
(-2.8)
A 		28
B 46.2
(3)
A 		6.8
(-3)
A 		40.2
(2.1)
A 		39.7
(2)
A 		39
C 10.2
(-3)
A 		43
(2.4)
A 		31.1
(0.4)
A 		46.6
(3)
A 		36
avr 32.5
(-3) 		35.1
(-0.3) 		33.1
(-2.4) 		38.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9.8
(-2.3)
A 		18
(-1.1)
A 		10.6
(-2.2)
A 		46.2
(3)
A 		46.5
(3)
A 		5.2
(-3)
A 		41
B 22.1
(-0.6)
A 		6.6
(-2.7)
A 		24.7
(-0.2)
A 		48
(3)
A 		40.7
(2)
A 		4.4
(-3)
A 		44
C 15.8
(-1.5)
A 		5.2
(-3)
A 		24.1
(-0.4)
A 		48.2
(3)
A 		29.1
(0.3)
A 		7.8
(-2.6)
A 		43
avr 15.9
(-1.5) 		9.9
(-2.4) 		19.8
(-1) 		47.5
(3) 		38.8
(1.7) 		5.8
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15
(3)
A 		12.1
(1.4)
A 		7.3
(-1.3)
A 		4.2
(-3)
A 		11
B 14.7
(3)
A 		1.7
(-3)
A 		9.3
(0.5)
A 		8.5
(0.1)
A 		13
C 3.4
(-3)
A 		12.4
(3)
A 		10.8
(1.9)
A 		7.9
(0)
A 		9
avr 11
(3) 		8.7
(-0.4) 		9.1
(0.2) 		6.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.8
(-2.8)
A 		6.4
(-0.6)
A 		2.3
(-2.5)
A 		11.7
(1.9)
A 		14
(3)
A 		1.3
(-3)
A 		13
B 7.7
(-0.6)
A 		2.2
(-2.8)
A 		6
(-1.2)
A 		12.7
(1.4)
A 		16.6
(3)
A 		1.6
(-3)
A 		15
C 5.9
(0.2)
A 		1.6
(-3)
A 		6.1
(0.3)
A 		9.7
(3)
A 		9.4
(2.8)
A 		2.6
(-2.3)
A 		8
avr 5.1
(-1.3) 		3.4
(-2.2) 		4.8
(-1.4) 		11.4
(2) 		13.3
(3) 		1.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181294_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14176
Sequence Type Exemplar sequence
Representative Public ID F20E11.6 NCBI
Target Description F20E11.6 /REP_DB=WormBase Gene ID /WP=CE18615 /TR=Q9XV86 /GB=CAB04139.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075021 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-72) (srw-72) mRNA, complete cds. 11/11 None
GENEFINDER00000027634 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17465840:17471138:1 9/11 None
F20E11.6 ENSEMBL cdna:known chromosome:CEL140:V:17469628:17471167:1 gene:F20E11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011464 3/11 Cross Hyb Matching Probes None
GENEFINDER00000011469 4/11 Cross Hyb Matching Probes None
SNAP00000027633 6/11 Cross Hyb Matching Probes None
Y68A4A.11 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17469627-17471167(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-72
Ensembl F20E11.6
Entrez Gene 184734 Entrez gene
SwissProt Q9XV86 EMBL-EBI
WormBase CE18615 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04139 Hypothetical protein F20E11.6 [Caenorhabditis elegans] ref|NP_507422.1| Serpentine Receptor, class W family member (srw-72) [Caenorhabditis elegans] 0.0
blast CAB04138 Hypothetical protein F20E11.7 [Caenorhabditis elegans] ref|NP_507421.1| F20E11.7 [Caenorhabditis elegans] 0.0
blast CAA16424 Hypothetical protein Y68A4A.10a [Caenorhabditis elegans] ref|NP_001024276.1| Y68A4A.10a [Caenorhabditis elegans] 1.0E-174
blast CAA16417 Hypothetical protein Y68A4A.5 [Caenorhabditis elegans] ref|NP_507355.1| Y68A4A.5 [Caenorhabditis elegans] 1.0E-110
blast CAB05643 Hypothetical protein W06G6.8 [Caenorhabditis elegans] ref|NP_507211.1| Serpentine Receptor, class W family member (srw-77) [Caenorhabditis elegans] 2.0E-86
blast CAB76728 Hypothetical protein W06G6.13 [Caenorhabditis elegans] ref|NP_507208.1| Serpentine Receptor, class W family member (srw-75) [Caenorhabditis elegans] 1.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.7E-54
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 9.6E-41
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.6E-18
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.5E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507422.1 7 15-37,50-72,102-121,134-156,205-227,248-270,285-307
F20E11.6 7 15-37,50-72,102-121,134-156,205-227,248-270,285-307
GENEFINDER00000027634 3 444-466,487-509,524-546
Sequence
Target Sequence 
>C. ELEGANS:181294_AT
gtggccgttctcatggaaaccgaacgaaaaatgcattgaacttccccagaattacagtga
aaaagtatatattcgcgcctcgaaagttgatatcattttgtttgatccagccgagtgtta
caattttattaccggactttccaagattgttgtaagtgtcatgtacccggttctagcttt
gatgctgatacttgatattcgaaagtctgcaaaaactgcgtcgtcactcagtgaaaaaag
agctaaagaaagataccactctggacgtatgattttggtgatgacaatattttacacaat
tgccagtgcgcctggaggaattgccaacttcattgaagtgtacatcgagattcctactga
ttcacttttaatggttatcctagggcaaggttccatattctttcaagcactgttctgttt
taactctgcgtctcattgtctgattaacttctcaatgtctacgaattaccgaaacacggt
gaaaatggcatttgggtttcaaaagaatgatgttttaacggtaagggtttggctactatt
tcaacttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCCGTTCTCATGGAAACCGAAC 593 491 501 Antisense
CATTTTGTTTGATCCAGCCGAGTGT 313 215 594 Antisense
GTCATGTACCCGGTTCTAGCTTTGA 482 465 658 Antisense
GCAAAAACTGCGTCGTCACTCAGTG 287 319 709 Antisense
TTTACACAATTGCCAGTGCGCCTGG 526 667 791 Antisense
GTGCGCCTGGAGGAATTGCCAACTT 684 477 806 Antisense
TCGAGATTCCTACTGATTCACTTTT 416 603 845 Antisense
GGTTCCATATTCTTTCAAGCACTGT 561 507 889 Antisense
ACTGTTCTGTTTTAACTCTGCGTCT 427 97 909 Antisense
GCGTCTCATTGTCTGATTAACTTCT 677 289 928 Antisense
GGGTTTGGCTACTATTTCAACTTAG 663 495 1025 Antisense
Sequence Source Affymetrix Proprietary Database