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[181292_at] 7TM chemoreceptor, srv family

Description F15E6.7 /REP_DB=WormBase Gene ID /WP=CE16996 /TR=O44492 /GB=AAB92061.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 27      6grp_cgc > 22      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 42.2
(-3)
A 		148.6
(3)
A 		69.6
(-1.5)
A 		74
(-1.2)
A 		106
B 77.1
(3)
A 		51.6
(-2.7)
A 		50.1
(-3)
A 		75
(2.5)
A 		27
C 56.1
(0.1)
A 		39
(-1)
A 		5
(-3)
A 		104.6
(3)
A 		100
avr 58.5
(-0.6) 		79.7
(2.3) 		41.6
(-3) 		84.5
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 141.8
(3)
A 		54
(-1.1)
A 		59.7
(-0.9)
A 		14
(-3)
A 		104
(1.2)
A 		91.5
(0.6)
A 		128
B 70.9
(0.6)
A 		73.6
(1.2)
A 		52.4
(-3)
A 		76.8
(1.8)
A 		59.7
(-1.6)
A 		83
(3)
A 		31
C 68.4
(0)
A 		109.7
(2.3)
A 		99.9
(1.8)
A 		122.1
(3)
A 		23.9
(-2.5)
A 		14.6
(-3)
A 		108
avr 93.7
(3) 		79.1
(0.2) 		70.7
(-1.4) 		71
(-1.4) 		62.5
(-3) 		63
(-2.9) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 15.3
(-1.7)
A 		32.3
(3)
A 		18.2
(-0.9)
A 		10.8
(-3)
A 		22
B 24.6
(3)
A 		12.7
(-2.5)
A 		11.6
(-3)
A 		16
(-1)
A 		13
C 18.6
(3)
A 		11.2
(0.4)
A 		1.8
(-3)
A 		17.6
(2.6)
A 		17
avr 19.5
(3) 		18.7
(2.5) 		10.5
(-3) 		14.8
(-0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 26.1
(1.9)
A 		19.2
(0.4)
A 		13
(-1)
A 		3.5
(-3)
A 		31.4
(3)
A 		22.3
(1)
A 		28
B 24.7
(1)
A 		24.5
(0.9)
A 		12.7
(-3)
A 		20.3
(-0.5)
A 		24.3
(0.8)
A 		30.9
(3)
A 		18
C 25.4
(1.3)
A 		33.5
(3)
A 		25.4
(1.3)
A 		24.6
(1.1)
A 		7.7
(-2.4)
A 		4.9
(-3)
A 		29
avr 25.4
(2.8) 		25.7
(3) 		17
(-2.4) 		16.1
(-3) 		21.1
(0.1) 		19.4
(-0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10911
Sequence Type Exemplar sequence
Representative Public ID F15E6.7 NCBI
Target Description F15E6.7 /REP_DB=WormBase Gene ID /WP=CE16996 /TR=O44492 /GB=AAB92061.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068131 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-4) (srv-4) mRNA, complete cds. 11/11 None
GENEFINDER00000035377 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4285415:4288425:-1 11/11 None
F15E6.7 ENSEMBL cdna:known chromosome:CEL140:IV:4285415:4288425:-1 gene:F15E6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4286122-4288431(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-4
Ensembl F15E6.7
Entrez Gene 184535 Entrez gene
SwissProt O44492 EMBL-EBI
WormBase CE33374 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500532 Serpentine Receptor, class V family member (srv-4) [Caenorhabditis elegans] gb|AAB92061.2| Serpentine receptor, class v protein 4 [Caenorhabditis elegans] 1.0E-167
blast NP_500532 Serpentine Receptor, class V family member (srv-4) [Caenorhabditis elegans] gb|AAB92061.2| Serpentine receptor, class v protein 4 [Caenorhabditis elegans] 1.0E-165
blast CAD60427 Hypothetical protein Y43F8C.19 [Caenorhabditis elegans] ref|NP_872231.1| Serpentine Receptor, class V family member (srv-3) [Caenorhabditis elegans] 3.0E-80
blast CAD60427 Hypothetical protein Y43F8C.19 [Caenorhabditis elegans] ref|NP_872231.1| Serpentine Receptor, class V family member (srv-3) [Caenorhabditis elegans] 5.0E-79
blast CAE56018 Hypothetical protein CBG23576 [Caenorhabditis briggsae] 1.0E-78
blast CAE56018 Hypothetical protein CBG23576 [Caenorhabditis briggsae] 4.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500532.2 7 15-34,47-69,89-111,132-154,186-208,228-250,270-292
F15E6.7 7 15-34,47-69,89-111,132-154,186-208,228-250,270-292
GENEFINDER00000035377 5 15-34,47-69,89-111,132-154,186-208
Sequence
Target Sequence 
>C. ELEGANS:181292_AT
cgcccacgcaaataccgagttcataacctattcgaagcagcaaacgatcattggattcct
cagctgttgtggttttcattgacagttatcaaaaatgccatgttcctagggtatacggta
gttgccgtcaatcggtgctccgagatatttcggtttaggaatcatgtaaagttctggtct
ccaacccttatcctaatagtttacttatctgaatggctggctccaacaattgtattaatt
ccactattctacactggaaatcacaatttctcactcatcgctgccccttctggcggattg
tttctacgcgccagtccggagttcatcaaactagatgtgctccaggacctcactttatcg
atattttgcttcctggtcagctcatttttgtatctcatcacttttgtgcatttggtgcag
actttgccgaaaactatgtcaaacacattcttcagtattaatcgatcggaatcttcaaat
ctcaacccaccaacagacctaattattttcaaatgtgcatttttctcatttgttctgttt
gtgccaaatttcgcaaaaacaatggttttatatttctccactaatcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCACGCAAATACCGAGTTCATA 136 257 220 Antisense
GATTCCTCAGCTGTTGTGGTTTTCA 406 433 273 Antisense
TGCCGTCAATCGGTGCTCCGAGATA 534 585 342 Antisense
ATGTAAAGTTCTGGTCTCCAACCCT 268 41 383 Antisense
TCAAACTAGATGTGCTCCAGGACCT 91 629 545 Antisense
TCCAGGACCTCACTTTATCGATATT 14 591 560 Antisense
CGATATTTTGCTTCCTGGTCAGCTC 347 249 578 Antisense
GGTCAGCTCATTTTTGTATCTCATC 34 505 594 Antisense
TCAACCCACCAACAGACCTAATTAT 459 631 701 Antisense
GTGCATTTTTCTCATTTGTTCTGTT 296 481 734 Antisense
GTTTTATATTTCTCCACTAATCCTC 358 449 784 Antisense
Sequence Source Affymetrix Proprietary Database