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[181291_at]

Description C34D4.4 /REP_DB=WormBase Gene ID /WP=CE06925 /TR=Q18449 /GB=AAB00701.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 64      6grp_total > 84      4grp_total > 58      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 636
(0.2)
P 		609.6
(-0.2)
P 		791.5
(3)
P 		453.6
(-3)
P 		338
B 482.4
(-3)
P 		807.3
(3)
P 		584
(-1.1)
P 		515.9
(-2.4)
P 		325
C 535.4
(-1.2)
P 		676.1
(1.3)
P 		771.6
(3)
P 		431.9
(-3)
P 		340
avr 551.3
(-1) 		697.7
(2.6) 		715.7
(3) 		467.1
(-3) 		249

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 620.4
(-3)
P 		644.7
(-2.6)
P 		707.1
(-1.5)
P 		969.7
(3)
P 		952.5
(2.7)
P 		795
(-0)
P 		349
B 630.2
(-2.9)
P 		705.5
(-1.5)
P 		627.2
(-3)
P 		937.9
(3)
P 		894.8
(2.2)
P 		864.3
(1.6)
P 		311
C 497.4
(-3)
P 		572.2
(-2)
P 		692.4
(-0.4)
P 		810.8
(1.3)
P 		862.7
(2)
P 		939.1
(3)
P 		442
avr 582.7
(-3) 		640.8
(-1.9) 		675.6
(-1.3) 		906.1
(3) 		903.3
(2.9) 		866.1
(2.3) 		323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 231.6
(3)
P 		132.3
(-0.6)
P 		206.9
(2.1)
P 		66.4
(-3)
P 		165
B 153.8
(-0.1)
P 		199.4
(3)
P 		135.3
(-1.3)
P 		109.9
(-3)
P 		90
C 177.2
(0.2)
P 		194.4
(0.7)
P 		268.9
(3)
P 		72.8
(-3)
P 		196
avr 187.5
(2.2) 		175.4
(1.6) 		203.7
(3) 		83
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 114.4
(-3)
P 		229.3
(1)
P 		154
(-1.6)
P 		245.9
(1.6)
P 		287.4
(3)
P 		193.5
(-0.3)
P 		173
B 219.3
(-1.1)
P 		234.8
(-0.7)
P 		152.3
(-3)
P 		248.4
(-0.3)
P 		363.5
(3)
P 		322.3
(1.8)
P 		211
C 184.4
(-2.2)
P 		174.6
(-2.5)
P 		176.2
(-2.5)
P 		163.1
(-3)
P 		279.2
(1.6)
P 		314.4
(3)
P 		151
avr 172.7
(-2.5) 		212.9
(-0.9) 		160.8
(-3) 		219.1
(-0.7) 		310
(3) 		276.7
(1.7) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9900
Sequence Type Exemplar sequence
Representative Public ID C34D4.4 NCBI
Target Description C34D4.4 /REP_DB=WormBase Gene ID /WP=CE06925 /TR=Q18449 /GB=AAB00701.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068721 NCBI Caenorhabditis elegans C34D4.4 (C34D4.4) mRNA, complete cds. 11/11 None
SNAP00000003804 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7149491:7150446:1 11/11 None
GENEFINDER00000003813 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7149491:7150446:1 11/11 None
C34D4.4 ENSEMBL cdna:known chromosome:CEL140:IV:7149320:7150446:1 gene:C34D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7149325-7150452(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34D4.4
Entrez Gene 183205 Entrez gene
SwissProt Q18449 EMBL-EBI
WormBase CE06925 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263710_AT expressed protein at
ATGENOME1:20064_AT expressed protein at
CANINE_2:CFAAFFX.28938.1.S1_S_AT similar to RIKEN cDNA 1810036I24 cfa
DROSOPHILA_2:1632417_A_AT dm
DROSGENOME1:148435_AT dm
CHICKEN:GGA.8031.2.S1_A_AT similar to RIKEN cDNA 1810036I24 gga
MOUSE430A_2:1435130_AT similar to RIKEN cDNA 1810036I24 mm
MOE430A:1435130_AT similar to RIKEN cDNA 1810036I24 mm
MOUSE430_2:1435130_AT similar to RIKEN cDNA 1810036I24 mm
MG-U74BV2:106161_AT similar to RIKEN cDNA 1810036I24 mm
RAE230B:1384749_AT Similar to RIKEN cDNA 1810036I24 rn
RAT230_2:1384749_AT Similar to RIKEN cDNA 1810036I24 rn
RAE230B:1385280_AT Similar to RIKEN cDNA 1810036I24 rn
RAT230_2:1385280_AT Similar to RIKEN cDNA 1810036I24 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00701 Hypothetical protein C34D4.4 [Caenorhabditis elegans] ref|NP_501122.1| C34D4.4 [Caenorhabditis elegans] sp|Q18449|YC2L_CAEEL Hypothetical protein C34D4.4 in chromosome IV 1.0E-127
blast AAB00701 Hypothetical protein C34D4.4 [Caenorhabditis elegans] ref|NP_501122.1| C34D4.4 [Caenorhabditis elegans] sp|Q18449|YC2L_CAEEL Hypothetical protein C34D4.4 in chromosome IV 1.0E-102
blast CAE61813 Hypothetical protein CBG05781 [Caenorhabditis briggsae] 3.0E-95
blast CAE61813 Hypothetical protein CBG05781 [Caenorhabditis briggsae] 8.0E-95
blast XP_392046 PREDICTED: similar to FAM18-like protein CG5021 [Apis mellifera] 6.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR008564 EMBL-EBI Eukaryotic protein of unknown function DUF846 4.7E-109
Pfam IPR008564 EMBL-EBI Eukaryotic protein of unknown function DUF846 4.7E-109
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501122.1 3 89-111,161-183,188-207
C34D4.4 3 89-111,161-183,188-207
SNAP00000003804 3 47-69,119-141,146-165
GENEFINDER00000003813 3 47-69,119-141,146-165
Sequence
Target Sequence 
>C. ELEGANS:181291_AT
aaagccaacgattgtgctcgcgcatctttccttcaagggtgctgcattattcttctactt
ttttgccaacttcttcaccaattctttcatcgttcagtttttggttattcttacactact
atcaatggacttttggactgtgaaaaatattaccggacgtctattggttggtcttcgctg
gtggaatttcgttgatgctgatggaaataatcactggaagtttgaaagtgccaaagatat
gactcgtttcgcaacaattgatcgccgtgttttttggcttggacttgttgttgggcctgc
ggcttggatcttctttgttgtcactgcgtttttgactttgaagtttgaatggatgattgt
tgctcttctcggagctctaatgaatatggccaacttgtggggataccttcgatgccgttg
gaataacactgaacagatgactagttatttccagaaatgggcattcctcaatgtcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCAACGATTGTGCTCGCGCAT 226 125 225 Antisense
GCGCATCTTTCCTTCAAGGGTGCTG 531 285 244 Antisense
GTGCTGCATTATTCTTCTACTTTTT 570 479 263 Antisense
TCTACTTTTTTGCCAACTTCTTCAC 44 615 278 Antisense
TCTTCACCAATTCTTTCATCGTTCA 455 615 296 Antisense
GGACGTCTATTGGTTGGTCTTCGCT 156 525 379 Antisense
GATCGCCGTGTTTTTTGGCTTGGAC 536 417 484 Antisense
GGCTTGGACTTGTTGTTGGGCCTGC 518 507 500 Antisense
CTTGGATCTTCTTTGTTGTCACTGC 67 219 527 Antisense
TGATTGTTGCTCTTCTCGGAGCTCT 105 565 578 Antisense
GAAATGGGCATTCCTCAATGTCCTC 490 361 678 Antisense
Sequence Source Affymetrix Proprietary Database