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[181290_at]

Description F22F7.2 /REP_DB=WormBase Gene ID /WP=CE25861 /TR=Q9GZF0 /GB=AAF99917.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 59.8
(-3)
A 		82.8
(-1.7)
A 		84.1
(-1.6)
A 		166.1
(3)
A 		106
B 81.9
(-2.3)
A 		78
(-3)
A 		111.8
(3)
A 		79.8
(-2.7)
A 		34
C 69.9
(-1.9)
A 		64.4
(-2.3)
A 		54.4
(-3)
A 		137.1
(3)
M 		83
avr 70.5
(-3) 		75.1
(-2.5) 		83.4
(-1.6) 		127.7
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 104.8
(1.3)
A 		103.5
(1.1)
M 		116.2
(3)
P 		97.2
(0.2)
P 		75.5
(-3)
A 		102
(0.9)
A 		41
B 177.6
(3)
P 		99.8
(-0.8)
P 		160.5
(2.2)
P 		67
(-2.4)
A 		66.1
(-2.4)
A 		54.8
(-3)
A 		123
C 150.2
(3)
P 		131.4
(1.9)
P 		137.7
(2.3)
P 		95.5
(-0.2)
A 		66.7
(-1.9)
A 		48.2
(-3)
A 		102
avr 144.2
(3) 		111.6
(0.4) 		138.1
(2.5) 		86.6
(-1.6) 		69.4
(-2.9) 		68.3
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 21.8
(0.6)
A 		18
(-3)
A 		22
(0.8)
A 		24.3
(3)
A 		6
B 26.1
(3)
A 		19.3
(-1.5)
A 		25.9
(2.9)
A 		17
(-3)
A 		9
C 23.1
(3)
A 		18.5
(-3)
A 		19
(-2.3)
A 		23.1
(3)
M 		5
avr 23.7
(3) 		18.6
(-3) 		22.3
(1.4) 		21.5
(0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 19.3
(-3)
A 		36.8
(3)
M 		25.3
(-0.9)
P 		24.6
(-1.2)
P 		22.8
(-1.8)
A 		24.8
(-1.1)
A 		18
B 61.8
(3)
P 		33.2
(-0.9)
P 		39
(-0.1)
P 		17.7
(-3)
A 		26.9
(-1.7)
A 		20.4
(-2.6)
A 		44
C 55.7
(3)
P 		40.1
(0.6)
P 		35.1
(-0.1)
P 		19.2
(-2.5)
A 		21.6
(-2.2)
A 		16.1
(-3)
A 		40
avr 45.6
(3) 		36.7
(0.9) 		33.1
(0) 		20.5
(-3) 		23.8
(-2.2) 		20.4
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15171
Sequence Type Exemplar sequence
Representative Public ID F22F7.2 NCBI
Target Description F22F7.2 /REP_DB=WormBase Gene ID /WP=CE25861 /TR=Q9GZF0 /GB=AAF99917.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071175 NCBI Caenorhabditis elegans F22F7.2 (F22F7.2) mRNA, complete cds. 11/11 None
SNAP00000032282 ENSEMBL cdna:SNAP chromosome:CEL140:V:2122694:2126852:1 11/11 None
GENEFINDER00000032287 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2122694:2126852:1 11/11 None
F22F7.2 ENSEMBL cdna:known chromosome:CEL140:V:2122694:2127127:1 gene:F22F7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2122693-2126432(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22F7.2
Entrez Gene 184861 Entrez gene
SwissProt Q9GZF0 EMBL-EBI
WormBase CE17692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99917 Hypothetical protein F22F7.2 [Caenorhabditis elegans] ref|NP_503576.2| F22F7.2 [Caenorhabditis elegans] pir||T33186 hypothetical protein F22F7.2 - Caenorhabditis elegans 0.0
blast CAE71032 Hypothetical protein CBG17873 [Caenorhabditis briggsae] 1.0E-103
blast AAF99915 Hypothetical protein F22F7.1a [Caenorhabditis elegans] ref|NP_503577.1| F22F7.1a [Caenorhabditis elegans] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:181290_AT
tactcgttcagtgcgacatcgttacaagctcttctcctcggcttcaatggtgcacctgat
cttggctccctccgccattcaattatgcccaaaaaaattgaccacctgttggcccccaat
aaaaaacgtcattttttatggaaaatcgaggagaagggaagcgagggatgggcgatgcca
tttctcggcgcagacaagtcaattgtgacgaggagtcaatattttgattatgtgatgaat
aacgtgaagcctgtaagattcacaccgtttaccagatttgaaagtcgatggaatgcactg
ttattggcagctcttatgggtctgctgaaaactttttcaaagtacggaactatgcaaagg
tttattatgagatatccggagctttgtagtggaaaattgttcagtaaatcagggcccagt
gaagagcagatgaaagaagcaacattcacctatcaattctacggttatggttacggtaga
ggagatccacgtgaccgggaacccaagaagaagcttctcgtaacatgcacaggtccagat
gttggctatattgcgacaagtggatgtgttttgtcctcggtattggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCGTTCAGTGCGACATCGTTAC 31 645 556 Antisense
CTCCGCCATTCAATTATGCCCAAAA 644 233 625 Antisense
GAGGGATGGGCGATGCCATTTCTCG 114 403 718 Antisense
CCATTTCTCGGCGCAGACAAGTCAA 277 269 733 Antisense
AGATTCACACCGTTTACCAGATTTG 29 65 811 Antisense
GAATGCACTGTTATTGGCAGCTCTT 259 331 846 Antisense
TGGCAGCTCTTATGGGTCTGCTGAA 410 545 860 Antisense
GCAACATTCACCTATCAATTCTACG 695 319 994 Antisense
GAAGCTTCTCGTAACATGCACAGGT 667 341 1065 Antisense
ATGCACAGGTCCAGATGTTGGCTAT 518 43 1080 Antisense
GATGTGTTTTGTCCTCGGTATTGGT 223 409 1118 Antisense
Sequence Source Affymetrix Proprietary Database