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[181289_at]

Description F48A9.1 /REP_DB=WormBase Gene ID /WP=CE10716 /TR=O01568 /GB=AAB93343.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 39      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 175.8
(3)
A 		25.4
(-3)
A 		36.8
(-2.5)
A 		53.7
(-1.9)
A 		150
B 187.6
(3)
P 		56.8
(-2.6)
A 		46.2
(-3)
A 		69.5
(-2)
A 		141
C 173.2
(3)
P 		98.9
(0.2)
A 		15.5
(-3)
A 		158.1
(2.4)
A 		158
avr 178.9
(3) 		60.4
(-1.9) 		32.8
(-3) 		93.8
(-0.5) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 231.8
(3)
A 		109
(-0.5)
A 		129.6
(0)
A 		61.9
(-1.9)
A 		24.2
(-3)
A 		121.4
(-0.2)
A 		208
B 151.4
(1.4)
M 		189.7
(3)
A 		102
(-0.7)
A 		87.7
(-1.3)
A 		48.8
(-3)
A 		65.3
(-2.3)
A 		141
C 145.5
(1.2)
A 		200.3
(3)
P 		135.3
(0.9)
A 		13.3
(-3)
A 		19.3
(-2.8)
A 		91.5
(-0.5)
M 		187
avr 176.2
(3) 		166.3
(2.6) 		122.3
(0.8) 		54.3
(-2) 		30.8
(-3) 		92.7
(-0.4) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 64
(3)
A 		5.5
(-3)
A 		9.6
(-2.6)
A 		7.9
(-2.8)
A 		59
B 59.8
(3)
P 		14
(-2.6)
A 		10.7
(-3)
A 		14.8
(-2.5)
A 		49
C 57.3
(3)
P 		28.4
(-0.3)
A 		5.4
(-3)
A 		26.7
(-0.5)
A 		52
avr 60.4
(3) 		16
(-2.1) 		8.6
(-3) 		16.5
(-2.1) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 42.7
(3)
A 		38.8
(2.3)
A 		28.2
(0.5)
A 		15.7
(-1.6)
A 		7.3
(-3)
A 		29.6
(0.8)
A 		35
B 52.7
(1.5)
M 		63.2
(3)
A 		24.8
(-2.3)
A 		23.2
(-2.5)
A 		19.8
(-3)
A 		24.3
(-2.4)
A 		43
C 53.9
(2.3)
A 		61.1
(3)
P 		34.4
(0.3)
A 		2.7
(-3)
A 		6.2
(-2.6)
A 		30.6
(-0.1)
M 		58
avr 49.8
(2.4) 		54.4
(3) 		29.1
(-0.5) 		13.9
(-2.6) 		11.1
(-3) 		28.2
(-0.6) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1962
Sequence Type Exemplar sequence
Representative Public ID F48A9.1 NCBI
Target Description F48A9.1 /REP_DB=WormBase Gene ID /WP=CE10716 /TR=O01568 /GB=AAB93343.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059499 NCBI Caenorhabditis elegans F48A9.1 (F48A9.1) mRNA, complete cds. 11/11 None
F48A9.1 ENSEMBL cdna:known chromosome:CEL140:I:6602575:6604965:1 gene:F48A9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6602503-6604088(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48A9.1
Entrez Gene 185957 Entrez gene
SwissProt O01568 EMBL-EBI
WormBase CE10716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93343 Hypothetical protein F48A9.1 [Caenorhabditis elegans] ref|NP_491900.1| F48A9.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181289_AT
taacggcagtgatttctacgacgagataactgaaccaactcaattcattcatcacgacta
tcgaccaaaaccattaggatttcaaacaataactcatccaattataatgactggatctcg
tgatgatcttcgatcacaaccaccgcaatatcctgctccgttaagcccattatatattgt
tcctgatcgtcatagaaatattgcaaactcagtttctcctggacaatattctagaagaag
taatggatatgaagatagaagaaaagatacagaagaattgagagacgagagaaaacgaga
aaatgagcaaaatcaaaatagggaaagataccaccatcgtcgatcaaaatcctcaaatcg
agatgatgcttctgtcagtcatcgttcacttcgtcatcgaagcatgtctccagcatcacg
tcgatcttttggaacatcactcggtggctcacaagagttcgtaattcctgctcattcacc
aattggtagcactttaatgctggcaagcccagatccaaatgagcttccagggcgaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACGGCAGTGATTTCTACGACGAG 607 635 417 Antisense
GATGATCTTCGATCACAACCACCGC 334 411 538 Antisense
CCTGCTCCGTTAAGCCCATTATATA 195 267 568 Antisense
GCAAACTCAGTTTCTCCTGGACAAT 134 319 619 Antisense
AAAGATACCACCATCGTCGATCAAA 381 121 740 Antisense
ATGCTTCTGTCAGTCATCGTTCACT 705 41 782 Antisense
TCATCGAAGCATGTCTCCAGCATCA 652 621 810 Antisense
CTCCAGCATCACGTCGATCTTTTGG 2 237 824 Antisense
TTGGAACATCACTCGGTGGCTCACA 264 709 845 Antisense
GAGTTCGTAATTCCTGCTCATTCAC 645 395 871 Antisense
CCAAATGAGCTTCCAGGGCGACCAG 442 273 931 Antisense
Sequence Source Affymetrix Proprietary Database