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[181288_at]

Description H02I12.5 /REP_DB=WormBase Gene ID /WP=CE16162 /TR=O45603 /GB=CAB07219.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 11.6
(-2.7)
A 		14.3
(-2.4)
A 		9.4
(-3)
A 		58.8
(3)
A 		49
B 7.3
(-2.9)
A 		15.4
(-0.4)
A 		7.1
(-3)
A 		26
(3)
A 		19
C 6.6
(-2.8)
A 		10.2
(-2.5)
A 		4.9
(-3)
A 		63.8
(3)
A 		59
avr 8.5
(-2.8) 		13.3
(-2.1) 		7.1
(-3) 		49.5
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 681
1 2 3 4 5 6 range
A 47.3
(-2.6)
A 		23.5
(-2.8)
A 		8.2
(-3)
A 		90.1
(-2.1)
A 		341.3
(0.6)
A 		556.2
(3)
P 		548
B 6.1
(-3)
A 		12.9
(-2.9)
A 		10.3
(-3)
A 		96.1
(-2.2)
A 		416
(0.6)
P 		685.7
(3)
P 		680
C 4.8
(-3)
A 		21
(-2.8)
A 		11.6
(-2.9)
A 		67.4
(-2.4)
A 		314.8
(0.2)
P 		590
(3)
P 		585
avr 19.4
(-2.9) 		19.1
(-2.9) 		10
(-3) 		84.5
(-2.3) 		357.4
(0.5) 		610.6
(3) 		601
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.2
(-1.3)
A 		3.1
(-2.4)
A 		2.5
(-3)
A 		8.6
(3)
A 		6
B 2.3
(-1.9)
A 		3.8
(0.4)
A 		1.6
(-3)
A 		5.5
(3)
A 		4
C 2.2
(-2.7)
A 		2.9
(-2.2)
A 		1.7
(-3)
A 		10.8
(3)
A 		9
avr 2.9
(-2.1) 		3.3
(-1.7) 		1.9
(-3) 		8.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 8.7
(-2.7)
A 		8.4
(-2.7)
A 		1.8
(-3)
A 		22.8
(-2.1)
A 		103
(1.5)
A 		135.4
(3)
P 		134
B 2.1
(-3)
A 		4.3
(-2.9)
A 		2.5
(-3)
A 		25.5
(-2.4)
A 		169
(0.9)
P 		255.7
(3)
P 		254
C 1.8
(-3)
A 		6.4
(-2.9)
A 		2.9
(-3)
A 		13.5
(-2.6)
A 		101.9
(0.1)
P 		197.5
(3)
P 		196
avr 4.2
(-2.9) 		6.4
(-2.9) 		2.4
(-3) 		20.6
(-2.4) 		124.6
(0.8) 		196.2
(3) 		194
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9927
Sequence Type Exemplar sequence
Representative Public ID H02I12.5 NCBI
Target Description H02I12.5 /REP_DB=WormBase Gene ID /WP=CE16162 /TR=O45603 /GB=CAB07219.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069750 NCBI Caenorhabditis elegans H02I12.5 (H02I12.5) mRNA, complete cds. 11/11 None
SNAP00000036325 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11402128:11403308:-1 11/11 None
GENEFINDER00000036329 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11402128:11403308:-1 11/11 None
H02I12.5 ENSEMBL cdna:known chromosome:CEL140:IV:11401919:11403308:-1 gene:H02I12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11402133-11403314(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H02I12.5
Entrez Gene 178064 Entrez gene
SwissProt O45603 EMBL-EBI
WormBase CE16162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07219 Hypothetical protein H02I12.5 [Caenorhabditis elegans] ref|NP_502151.1| H02I12.5 [Caenorhabditis elegans] 1.0E-173
blast NP_500636 Y17G9B.9 [Caenorhabditis elegans] gb|AAF60450.1| Hypothetical protein Y17G9B.9 [Caenorhabditis elegans] 1.0E-148
blast CAB60601 Hypothetical protein Y62E10A.14 [Caenorhabditis elegans] ref|NP_502583.1| Y62E10A.14 [Caenorhabditis elegans] 1.0E-146
Sequence
Target Sequence 
>C. ELEGANS:181288_AT
tgccgcatgctttcggccgaagatatctccagtctgattctaacttccctcctggccgag
ccgaaagagacgggtcaaaatgtggttcgatttgcgatccaggcaaagactgcaatgccg
ttccagcaattgtttgcaattctcgaaaaactggagatggaaatcgaaggcttccagatg
acagacagctttgtggtggcaacattgatccgatcacagagcaagagtactaccactcgt
cgcctgcgaacaacaaactgccgggaatacggaaatctcgagccaggactcgattcacaa
ggccgactgatggcctcgactgcatcaatcacgtgttcgattcgaggaaagcgccacgtg
gaaacgaggatcgtgtacaataacaactcgagcgccagggatcctttccggagatataga
tacatcgaattggagcaaacggtgaagtgcatgaaccgacgagtgcagattgtcgaagag
ccagtcgaatttcatgaattcgaggtcgaaaacgatatggtctcgttgagaaatggaatg
gtgcttgtcgacgacctaatctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGCATGCTTTCGGCCGAAGATA 527 585 451 Antisense
TCGGCCGAAGATATCTCCAGTCTGA 647 607 463 Antisense
ATCTCCAGTCTGATTCTAACTTCCC 434 33 475 Antisense
GCAAAGACTGCAATGCCGTTCCAGC 705 317 553 Antisense
AATGCCGTTCCAGCAATTGTTTGCA 88 167 564 Antisense
AATCGAAGGCTTCCAGATGACAGAC 1 169 612 Antisense
GTGGTGGCAACATTGATCCGATCAC 486 489 643 Antisense
CACTCGTCGCCTGCGAACAACAAAC 4 199 684 Antisense
ACAATAACAACTCGAGCGCCAGGGA 572 113 827 Antisense
CAGGGATCCTTTCCGGAGATATAGA 605 207 846 Antisense
GGTGCTTGTCGACGACCTAATCTCG 329 499 990 Antisense
Sequence Source Affymetrix Proprietary Database