[Home] | [Total List]

[181286_at]

Description C52E2.8 /REP_DB=WormBase Gene ID /WP=CE25832 /TR=Q9N4K4 /GB=AAF35422.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 1.1
(-3)
A 		8.7
(1.5)
A 		5.5
(-0.4)
A 		11.2
(3)
A 		10
B 2.6
(-3)
A 		18.2
(-0.1)
A 		6.9
(-2.2)
A 		35.2
(3)
A 		33
C 1.5
(-3)
A 		26.1
(0.3)
A 		11.3
(-1.7)
A 		46.1
(3)
A 		45
avr 1.7
(-3) 		17.7
(0.3) 		7.9
(-1.7) 		30.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 26.9
(0.8)
A 		16.1
(-0.8)
A 		42.3
(3)
A 		0.8
(-3)
A 		5.4
(-2.3)
A 		33.9
(1.8)
A 		42
B 2.8
(-2.1)
A 		1.5
(-2.8)
A 		2.3
(-2.4)
A 		2.6
(-2.2)
A 		12
(3)
A 		1.2
(-3)
A 		11
C 1.4
(-2.9)
A 		6.1
(-1.5)
A 		20.3
(3)
A 		16.6
(1.8)
A 		1.2
(-3)
A 		2.6
(-2.6)
A 		19
avr 10.4
(-1.4) 		7.9
(-2.3) 		21.6
(3) 		6.7
(-2.8) 		6.2
(-3) 		12.6
(-0.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.4
(-3)
A 		1.9
(3)
A 		1.4
(1)
A 		1.6
(1.8)
A 		2
B 0.8
(-3)
A 		4.5
(0.3)
A 		1.6
(-2.3)
A 		7.5
(3)
A 		7
C 0.5
(-3)
A 		7.5
(2.8)
A 		4
(-0.1)
A 		7.8
(3)
A 		7
avr 0.6
(-3) 		4.6
(1.8) 		2.3
(-1) 		5.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5
(0.2)
A 		5.7
(0.7)
A 		9.2
(3)
A 		0.2
(-3)
A 		1.6
(-2.1)
A 		8.3
(2.4)
A 		9
B 1
(-2.2)
A 		0.5
(-2.9)
A 		0.6
(-2.7)
A 		0.7
(-2.6)
A 		4.9
(3)
A 		0.4
(-3)
A 		5
C 0.5
(-2.9)
A 		1.9
(-1.1)
A 		5.2
(3)
A 		3.3
(0.6)
A 		0.4
(-3)
A 		0.9
(-2.4)
A 		5
avr 2.2
(-1.7) 		2.7
(-0.8) 		5
(3) 		1.4
(-3) 		2.3
(-1.5) 		3.2
(0) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5844
Sequence Type Exemplar sequence
Representative Public ID C52E2.8 NCBI
Target Description C52E2.8 /REP_DB=WormBase Gene ID /WP=CE25832 /TR=Q9N4K4 /GB=AAF35422.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061697 NCBI Caenorhabditis elegans C52E2.8 (C52E2.8) mRNA, complete cds. 11/11 None
GENEFINDER00000007518 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1855621:1857825:-1 11/11 None
C52E2.8 ENSEMBL cdna:known chromosome:CEL140:II:1855621:1857799:-1 gene:C52E2.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007515 8/11 Cross Hyb Matching Probes None
SNAP00000007516 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026914 3/11 Cross Hyb Matching Probes None
SNAP00000019404 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C52E2.8
Entrez Gene 183727 Entrez gene
SwissProt Q9N4K4 EMBL-EBI
WormBase CE25832 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35422 Hypothetical protein C52E2.8 [Caenorhabditis elegans] ref|NP_494098.1| C52E2.8 [Caenorhabditis elegans] 0.0
blast CAE73783 Hypothetical protein CBG21332 [Caenorhabditis briggsae] 2.0E-51
blast T21102 hypothetical protein F19B2.1 - Caenorhabditis elegans 1.0E-38
Sequence
Target Sequence 
>C. ELEGANS:181286_AT
gatacctcagaaaatgggtttcggaacgagggtgacctcccggaagaatttggtcatgga
aactctggatacgataaagcagcatcaaaaactgaaccaccaaaagaaaatatttcggga
acttcagaagaattgaaatggagcacatcagccagaaaagattatgctctatcaaaaatt
ggaacctatggtactgaaacagttggaaatagtgttcacggcgagagactgccaaaaaat
gtcaaaattggagttgcttatcacaacgttgatattgtctccagaaataaatttgctatt
gagataattgtgaccaagaaagatactatcccagataaggctaccgtgaaccgagatgtc
cctacgtgccatctttttggggccgggagtgtcgcgaactcagtgaataataaatattcc
cttcttcacgactttcacatttgtatcttttcccgtttaattacacaattatctctgtta
aaagtcgttatcttcatcgccttcacaccacgagacgccccgggaccgtttgaattgccg
ccatctaccgtactccacctgcacatcttaccacccacgaaggaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCTCAGAAAATGGGTTTCGGA 425 423 1339 Antisense
GAGGGTGACCTCCCGGAAGAATTTG 543 399 1366 Antisense
TGGTCATGGAAACTCTGGATACGAT 598 547 1389 Antisense
AATATTTCGGGAACTTCAGAAGAAT 211 171 1447 Antisense
GGAGCACATCAGCCAGAAAAGATTA 83 521 1478 Antisense
ATCACAACGTTGATATTGTCTCCAG 549 27 1598 Antisense
GATACTATCCCAGATAAGGCTACCG 666 411 1660 Antisense
CTTCTTCACGACTTTCACATTTGTA 475 221 1759 Antisense
TCACATTTGTATCTTTTCCCGTTTA 297 627 1773 Antisense
ATTATCTCTGTTAAAAGTCGTTATC 252 13 1806 Antisense
CATCTTACCACCCACGAAGGAAACG 154 213 1902 Antisense
Sequence Source Affymetrix Proprietary Database