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[181283_at]

Description F53A9.3 /REP_DB=WormBase Gene ID /WP=CE02763 /TR=Q20688 /GB=AAC46558.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 42      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 19
(-1.2)
A 		29.9
(0.6)
A 		8.3
(-3)
A 		44.5
(3)
A 		36
B 3.7
(-3)
A 		80.5
(3)
A 		70
(2.2)
A 		7.3
(-2.7)
A 		77
C 4.9
(-3)
A 		79.1
(3)
M 		36.3
(-0.5)
A 		29.2
(-1)
A 		74
avr 9.2
(-3) 		63.2
(3) 		38.2
(0.2) 		27
(-1) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 98.5
(3)
A 		16.3
(-2.4)
A 		66.3
(0.9)
A 		7.6
(-3)
A 		42.3
(-0.7)
A 		58.2
(0.3)
A 		91
B 82.5
(3)
M 		59.5
(1.1)
A 		34.1
(-1.1)
A 		16.9
(-2.5)
A 		39.9
(-0.6)
A 		11
(-3)
A 		72
C 100
(3)
A 		57.6
(-0.5)
A 		54
(-0.8)
A 		76.8
(1.1)
A 		36.7
(-2.2)
A 		27.6
(-3)
A 		72
avr 93.7
(3) 		44.5
(-1.8) 		51.5
(-1.1) 		33.8
(-2.9) 		39.6
(-2.3) 		32.3
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 6.9
(3)
A 		6.5
(2.5)
A 		2.2
(-3)
A 		6.5
(2.5)
A 		5
B 1.2
(-3)
A 		19.9
(3)
A 		16.2
(1.8)
A 		1.6
(-2.9)
A 		19
C 1.6
(-3)
A 		22.7
(3)
M 		12.6
(0.1)
A 		4.9
(-2.1)
A 		21
avr 3.2
(-3) 		16.4
(3) 		10.3
(0.2) 		4.3
(-2.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 18.2
(3)
A 		5.8
(-1.6)
A 		14.4
(1.6)
A 		1.9
(-3)
A 		12.8
(1)
A 		14.2
(1.5)
A 		16
B 28.7
(3)
M 		19.8
(0.8)
A 		8.3
(-2)
A 		4.5
(-2.9)
A 		16.2
(-0)
A 		4.1
(-3)
A 		25
C 37.1
(3)
A 		17.6
(-1.2)
A 		13.7
(-2)
A 		15.4
(-1.7)
A 		11.9
(-2.4)
A 		9.2
(-3)
A 		28
avr 28
(3) 		14.4
(-0.9) 		12.1
(-1.6) 		7.3
(-3) 		13.6
(-1.2) 		9.2
(-2.4) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16311
Sequence Type Exemplar sequence
Representative Public ID F53A9.3 NCBI
Target Description F53A9.3 /REP_DB=WormBase Gene ID /WP=CE02763 /TR=Q20688 /GB=AAC46558.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077071(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077071 NCBI Caenorhabditis elegans F53A9.3 (F53A9.3) mRNA, complete cds. 10/11 None
F53A9.3 ENSEMBL cdna:known chromosome:CEL140:X:8708303:8709308:1 gene:F53A9.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001089 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8708895-8709267(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A9.3
Entrez Gene 181117 Entrez gene
SwissProt Q20688 EMBL-EBI
WormBase CE30140 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46558 Hypothetical protein F53A9.3 [Caenorhabditis elegans] ref|NP_509472.2| F53A9.3 [Caenorhabditis elegans] 1.0E-85
blast CAE69338 Hypothetical protein CBG15415 [Caenorhabditis briggsae] 1.0E-81
Sequence
Target Sequence 
>C. ELEGANS:181283_AT
gtatacctggaattttgttattaaggtgaatattggatacgttgaaaatgtcaatgatga
tattctggatgtaagaggttgcgatttccggcttttaatatttggtgttcaacatgtaga
gataattcgtgactggctccgttttctggttattagacaacgcattccacattcattgat
ggggcttccgttcgattggcaggtgaaaccaataagagatgacaaagagttacaactatc
tcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATACCTGGAATTTTGTTATTAAG 564 453 15 Antisense
GTAAGAGGTTGCGATTTCCGGCTTT 623 459 85 Antisense
GTTGCGATTTCCGGCTTTTAATATT 391 439 92 Antisense
TCCGGCTTTTAATATTTGGTGTTCA 554 589 101 Antisense
GGTGTTCAACATGTAGAGATAATTC 81 499 118 Antisense
GATAATTCGTGACTGGCTCCGTTTT 240 421 135 Antisense
ACTGGCTCCGTTTTCTGGTTATTAG 570 95 146 Antisense
ATTAGACAACGCATTCCACATTCAT 265 13 166 Antisense
CCACATTCATTGATGGGGCTTCCGT 613 275 181 Antisense
GCTTCCGTTCGATTGGCAGGTGAAA 563 305 198 Antisense
GACAAAGAGTTACAACTATCTCGAA 174 365 235 Antisense
Sequence Source Affymetrix Proprietary Database