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[181282_at]

Description W03G11.2 /REP_DB=WormBase Gene ID /WP=CE03782 /TR=Q23151 /GB=CAA91545.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 2.6
(-3)
A 		6
(-2.6)
A 		5.1
(-2.7)
A 		59.8
(3)
A 		57
B 3.7
(-3)
A 		4.7
(-2.8)
A 		7.6
(-2.2)
A 		34.3
(3)
A 		31
C 4
(-2.8)
A 		5.3
(-2.5)
A 		3.5
(-3)
A 		23.3
(3)
A 		20
avr 3.4
(-3) 		5.3
(-2.7) 		5.4
(-2.7) 		39.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 7.8
(-2.6)
A 		19
(-1.3)
A 		31.7
(0.2)
A 		3.9
(-3)
A 		56.6
(3)
M 		26.6
(-0.4)
A 		53
B 4.9
(-2.8)
A 		19.5
(-0.7)
A 		3.4
(-3)
A 		44.1
(2.7)
A 		46.2
(3)
P 		37.6
(1.8)
A 		43
C 17.8
(-1.8)
A 		35.2
(-0.2)
A 		7.6
(-2.7)
A 		4.1
(-3)
A 		70.1
(3)
A 		32.3
(-0.4)
M 		66
avr 10.2
(-3) 		24.6
(-1.2) 		14.2
(-2.5) 		17.4
(-2.1) 		57.6
(3) 		32.2
(-0.2) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1
(-3)
A 		1.3
(-2.8)
A 		1.3
(-2.8)
A 		8.7
(3)
A 		8
B 1.2
(-3)
A 		1.2
(-3)
A 		1.8
(-2.4)
A 		7.3
(3)
A 		6
C 1.3
(-2.8)
A 		1.5
(-2.3)
A 		1.2
(-3)
A 		3.9
(3)
A 		3
avr 1.2
(-3) 		1.3
(-2.9) 		1.4
(-2.8) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		6.8
(-0.8)
A 		6.9
(-0.8)
A 		1
(-3)
A 		17.1
(3)
M 		6.5
(-1)
A 		16
B 1.7
(-2.7)
A 		6.5
(-1.1)
A 		0.8
(-3)
A 		11.7
(0.6)
A 		18.8
(3)
P 		14
(1.4)
A 		18
C 6.6
(-1.4)
A 		10.7
(-0.3)
A 		1.9
(-2.7)
A 		0.8
(-3)
A 		22.7
(3)
A 		10.8
(-0.3)
M 		22
avr 3.2
(-3) 		8
(-1.2) 		3.2
(-3) 		4.5
(-2.5) 		19.5
(3) 		10.4
(-0.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16258
Sequence Type Exemplar sequence
Representative Public ID W03G11.2 NCBI
Target Description W03G11.2 /REP_DB=WormBase Gene ID /WP=CE03782 /TR=Q23151 /GB=CAA91545.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077621 NCBI Caenorhabditis elegans W03G11.2 (W03G11.2) mRNA, complete cds. 11/11 None
SNAP00000031754 ENSEMBL cdna:SNAP chromosome:CEL140:X:12106415:12108489:-1 10/11 None
GENEFINDER00000031756 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12106415:12108346:-1 11/11 None
W03G11.2 ENSEMBL cdna:known chromosome:CEL140:X:12106415:12108489:-1 gene:W03G11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12106414-12108489(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03G11.2
Entrez Gene 189172 Entrez gene
SwissProt Q23151 EMBL-EBI
WormBase CE35633 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91545 Hypothetical protein W03G11.2 [Caenorhabditis elegans] ref|NP_510022.2| W03G11.2 [Caenorhabditis elegans] 0.0
blast CAE69874 Hypothetical protein CBG16211 [Caenorhabditis briggsae] 1.0E-141
blast CAE69874 Hypothetical protein CBG16211 [Caenorhabditis briggsae] 1.0E-138
blast CAE69874 Hypothetical protein CBG16211 [Caenorhabditis briggsae] 1.0E-130
blast CAE56237 Hypothetical protein CBG23873 [Caenorhabditis briggsae] 8.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR005045 EMBL-EBI Eukaryotic protein of unknown function DUF284 4.9E-25
Pfam IPR005045 EMBL-EBI Eukaryotic protein of unknown function DUF284 1.0E-84
Pfam IPR005045 EMBL-EBI Eukaryotic protein of unknown function DUF284 1.4E-84
Pfam IPR005045 EMBL-EBI Eukaryotic protein of unknown function DUF284 3.1E-13
Pfam IPR005045 EMBL-EBI Eukaryotic protein of unknown function DUF284 1.0E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510022.2 2 46-68,318-340
W03G11.2 2 46-68,318-340
SNAP00000031754 2 46-68,316-338
GENEFINDER00000031756 3 21-43,63-85,315-337
Sequence
Target Sequence 
>C. ELEGANS:181282_AT
atacttttactacgagctgcatgacacatttatgatgcacagatccctgaaccaagcata
ttgcaaaaagcagttaataacaggagagtcgaatgaatactctttcagtttaacattcaa
cggctctccaattgcttggaccgaagaaggggtgatcgctgataaactacgccacatgtt
tttcgaacctaacgagacaaacttatgcgacgctgaacagtttcgagaaactttgaaacc
gattggatggaaacatgaactttgtgaaatgggcgggtatcgcaatatttctcttatcaa
atggttagaatcagcgaccaacaaaaatttcaagaaattctacagaatacttaataccac
aaaacataatgggctatatcaaggtgttcacagattgtattttgataatgaatataaacc
tggatcattgattaaaagcacatacccgatgaagaaatttttctggattttgcatccatc
ttgggttgggacggatcagaagtttttggaggtgatgtacttaatagttggaacgggttt
acttgcattatcttgtggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTTTTACTACGAGCTGCATGAC 665 23 309 Antisense
GACACATTTATGATGCACAGATCCC 274 367 331 Antisense
CACAGATCCCTGAACCAAGCATATT 219 195 346 Antisense
CAGTTTAACATTCAACGGCTCTCCA 425 205 414 Antisense
GGCTCTCCAATTGCTTGGACCGAAG 402 537 430 Antisense
GATCGCTGATAAACTACGCCACATG 183 417 462 Antisense
ACGAGACAAACTTATGCGACGCTGA 524 93 500 Antisense
GCGGGTATCGCAATATTTCTCTTAT 436 293 581 Antisense
ATGGGCTATATCAAGGTGTTCACAG 672 49 677 Antisense
GGATTTTGCATCCATCTTGGGTTGG 698 509 773 Antisense
GGTTTACTTGCATTATCTTGTGGTC 41 507 844 Antisense
Sequence Source Affymetrix Proprietary Database