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[181281_at]

Description W03G1.5 /REP_DB=WormBase Gene ID /WP=CE17283 /TR=Q9UAY0 /GB=AAD14753.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 998
1 2 3 4 range
A 54.1
(-2.8)
A 		28.6
(-2.9)
A 		16.5
(-3)
A 		981.6
(3)
P 		965
B 75.8
(-2.7)
A 		31
(-3)
A 		23.7
(-3)
A 		1011.4
(3)
P 		988
C 132.9
(-2.1)
A 		21.7
(-2.9)
A 		13.1
(-3)
A 		801.5
(3)
P 		788
avr 87.6
(-2.5) 		27.1
(-2.9) 		17.8
(-3) 		931.5
(3) 		914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 347.5
(3)
A 		76.8
(-3)
A 		215.8
(0.1)
A 		269.8
(1.3)
A 		231.4
(0.4)
A 		190.2
(-0.5)
A 		271
B 322.4
(1.9)
A 		155.9
(-2.3)
A 		365.8
(3)
A 		271.2
(0.6)
A 		209.6
(-0.9)
A 		127.6
(-3)
A 		238
C 303
(3)
M 		254.3
(1.9)
A 		35.5
(-2.8)
A 		27.6
(-3)
A 		207.5
(0.9)
A 		124.4
(-0.9)
A 		275
avr 324.3
(3) 		162.3
(-2.5) 		205.7
(-1) 		189.5
(-1.6) 		216.2
(-0.7) 		147.4
(-3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 19.7
(-2.3)
A 		6.2
(-2.9)
A 		4.3
(-3)
A 		143.7
(3)
P 		139
B 24.2
(-2.5)
A 		7.7
(-2.9)
A 		5.5
(-3)
A 		215.5
(3)
P 		210
C 44
(-1.2)
A 		6.2
(-2.9)
A 		4.6
(-3)
A 		135.2
(3)
P 		131
avr 29.3
(-2.1) 		6.7
(-2.9) 		4.8
(-3) 		164.8
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 64.1
(2.2)
A 		27.3
(-3)
A 		47
(-0.2)
A 		68.4
(2.8)
A 		69.8
(3)
A 		46.3
(-0.3)
A 		43
B 112.2
(3)
A 		51.9
(-2.6)
A 		88.8
(0.8)
A 		71.8
(-0.8)
A 		85.2
(0.5)
A 		47.6
(-3)
A 		65
C 112.3
(3)
M 		77.6
(1)
A 		9
(-2.8)
A 		5.6
(-3)
A 		67.2
(0.5)
A 		41.6
(-1)
A 		107
avr 96.2
(3) 		52.3
(-2.2) 		48.3
(-2.6) 		48.6
(-2.6) 		74.1
(0.4) 		45.2
(-3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181281_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10706
Sequence Type Exemplar sequence
Representative Public ID W03G1.5 NCBI
Target Description W03G1.5 /REP_DB=WormBase Gene ID /WP=CE17283 /TR=Q9UAY0 /GB=AAD14753.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067535 NCBI Caenorhabditis elegans W03G1.5 (W03G1.5) mRNA, complete cds. 11/11 None
SNAP00000041677 ENSEMBL cdna:SNAP chromosome:CEL140:IV:505069:506484:-1 11/11 None
GENEFINDER00000041691 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:505069:506484:-1 11/11 None
W03G1.5 ENSEMBL cdna:known chromosome:CEL140:IV:505069:506484:-1 gene:W03G1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:505068-506484(-) 97.46 100.0
Public Domain and Genome References
Gene Title
Ensembl W03G1.5
Entrez Gene 189167 Entrez gene
SwissProt Q9UAY0 EMBL-EBI
WormBase CE17283 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14753 Hypothetical protein W03G1.5 [Caenorhabditis elegans] ref|NP_499936.1| W03G1.5 [Caenorhabditis elegans] 2.0E-31
blast CAE58476 Hypothetical protein CBG01616 [Caenorhabditis briggsae] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:181281_AT
atctccacgaggtcgtcatggtcatggaggccacggaggacatggatcacgctccggatc
tccaggtggtcgtcatggtcacggaggctcagggcatcatcgtggaggtcgtcatggagg
ccacggaaggcatggatcccgctccggatctccaggaggtcgtcatggtcacggaggacg
ccacggcccaccacattgtccaggacgccatggaagacatggatcccgttcccactctcc
tagaggacacgggcacggaggacgtcacgggccaccacactgcccagggcgtcatggaca
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCACGAGGTCGTCATGGTCAT 57 33 900 Antisense
CCACGAGGTCGTCATGGTCATGGAG 347 269 904 Antisense
CGAGGTCGTCATGGTCATGGAGGCC 451 249 907 Antisense
CACCACATTGTCCAGGACGCCATGG 21 203 1088 Antisense
ATTGTCCAGGACGCCATGGAAGACA 3 5 1094 Antisense
ATGGAAGACATGGATCCCGTTCCCA 321 53 1109 Antisense
CCACTCTCCTAGAGGACACGGGCAC 281 275 1131 Antisense
CTCTCCTAGAGGACACGGGCACGGA 274 231 1134 Antisense
CTCCTAGAGGACACGGGCACGGAGG 376 233 1136 Antisense
CCACACTGCCCAGGGCGTCATGGAC 630 275 1174 Antisense
ACACTGCCCAGGGCGTCATGGACAC 310 109 1176 Antisense
Sequence Source Affymetrix Proprietary Database