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[181280_at]

Description C38C3.6 /REP_DB=WormBase Gene ID /WP=CE08643 /TR=O17075 /GB=AAB70330.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 622
1 2 3 4 range
A 217
(-2.1)
P 		152.8
(-2.9)
M 		148.2
(-3)
A 		587.8
(3)
P 		440
B 206.1
(-0.6)
P 		140.1
(-1.4)
A 		19.6
(-3)
A 		485.5
(3)
P 		466
C 225.6
(-1.5)
P 		169.5
(-2.1)
A 		84.3
(-3)
A 		641.8
(3)
P 		558
avr 216.2
(-1.4) 		154.1
(-2.1) 		84
(-3) 		571.7
(3) 		488

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 254.9
(3)
P 		133
(-2.7)
P 		144.3
(-2.2)
P 		126.2
(-3)
A 		160.7
(-1.4)
A 		133.1
(-2.7)
A 		129
B 262.6
(3)
P 		197.9
(0.5)
P 		133.8
(-2)
P 		206.6
(0.8)
P 		107.9
(-3)
A 		127.4
(-2.2)
P 		155
C 145
(-1)
P 		261.5
(3)
P 		169.7
(-0.1)
A 		187
(0.5)
P 		84.7
(-3)
A 		149.3
(-0.8)
P 		177
avr 220.8
(3) 		197.5
(1.6) 		149.3
(-1.2) 		173.3
(0.2) 		117.8
(-3) 		136.6
(-1.9) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 79
(2.2)
P 		33.2
(-3)
M 		38.7
(-2.4)
A 		86
(3)
P 		53
B 65.7
(0.7)
P 		34.6
(-1.2)
A 		4.5
(-3)
A 		103.5
(3)
P 		99
C 74.7
(0.4)
P 		48.7
(-1.5)
A 		29.4
(-3)
A 		108.2
(3)
P 		79
avr 73.1
(0.9) 		38.8
(-1.8) 		24.2
(-3) 		99.2
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 47
(2.5)
P 		47.3
(2.6)
P 		31.4
(-3)
P 		32
(-2.8)
A 		48.5
(3)
A 		32.4
(-2.6)
A 		17
B 91.4
(3)
P 		65.9
(0.4)
P 		32.5
(-3)
P 		54.7
(-0.7)
P 		43.8
(-1.8)
A 		47.5
(-1.5)
P 		59
C 53.7
(0)
P 		79.8
(3)
P 		43.2
(-1.2)
A 		37.6
(-1.8)
P 		27.4
(-3)
A 		50
(-0.4)
P 		52
avr 64
(2.9) 		64.3
(3) 		35.7
(-3) 		41.4
(-1.8) 		39.9
(-2.1) 		43.3
(-1.4) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15125
Sequence Type Exemplar sequence
Representative Public ID C38C3.6 NCBI
Target Description C38C3.6 /REP_DB=WormBase Gene ID /WP=CE08643 /TR=O17075 /GB=AAB70330.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071028 NCBI Caenorhabditis elegans C38C3.6 (C38C3.6) mRNA, complete cds. 11/11 None
SNAP00000040089 ENSEMBL cdna:SNAP chromosome:CEL140:V:1476630:1485487:-1 11/11 None
GENEFINDER00000040098 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1484864:1485487:-1 11/11 None
C38C3.6 ENSEMBL cdna:known chromosome:CEL140:V:1484864:1485487:-1 gene:C38C3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1484863-1485487(-) 94.85 100.0
Public Domain and Genome References
Gene Title
Ensembl C38C3.6
Entrez Gene 183301 Entrez gene
SwissProt O17075 EMBL-EBI
WormBase CE08643 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70330 Hypothetical protein C38C3.6 [Caenorhabditis elegans] ref|NP_503429.1| C38C3.6 [Caenorhabditis elegans] 5.0E-58
blast AAB70330 Hypothetical protein C38C3.6 [Caenorhabditis elegans] ref|NP_503429.1| C38C3.6 [Caenorhabditis elegans] 7.0E-55
blast CAE62479 Hypothetical protein CBG06577 [Caenorhabditis briggsae] 3.0E-49
blast CAE62479 Hypothetical protein CBG06577 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503429.1 1 5-27
C38C3.6 1 5-27
SNAP00000040089 3 5-27,205-224,234-253
GENEFINDER00000040098 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:181280_AT
tcgaacacgctttactctacatcgccgtaccagtcatcagttttagccttctcgtgtata
tattttatattttaaaacgaagacatcgaagctcaatgaacgttggctatccattcccac
cacaacaattgggacctattccaacagctccagtgaatgaggaagcccctccatatggtg
aggctgtgacatgtcgaacagataacattttcgctatcacagaaccggatctctcccgat
actacaacatgcactatcttgacgagtgctacccgccaaacttcatcgttccacctaccg
agccaccaccgccgtacccgggactagaaaagggacctccaccattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAACACGCTTTACTCTACATCGC 557 601 20 Antisense
GCCGTACCAGTCATCAGTTTTAGCC 86 285 43 Antisense
ATCAGTTTTAGCCTTCTCGTGTATA 669 27 55 Antisense
AATGAACGTTGGCTATCCATTCCCA 196 163 114 Antisense
ATCCATTCCCACCACAACAATTGGG 361 39 128 Antisense
ATTGGGACCTATTCCAACAGCTCCA 548 3 147 Antisense
GCTCCAGTGAATGAGGAAGCCCCTC 40 299 166 Antisense
GAAGCCCCTCCATATGGTGAGGCTG 481 343 181 Antisense
TTCGCTATCACAGAACCGGATCTCT 73 697 229 Antisense
CACTATCTTGACGAGTGCTACCCGC 663 195 271 Antisense
TAGAAAAGGGACCTCCACCATTGGA 448 649 344 Antisense
Sequence Source Affymetrix Proprietary Database