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[181279_at] 7TM chemoreceptor, srab family

Description T20D4.1 /REP_DB=WormBase Gene ID /WP=CE13780 /TR=P91475 /GB=AAB37597.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 12      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 10.5
(-1.8)
A 		6.9
(-2.5)
A 		4.2
(-3)
A 		36.7
(3)
A 		33
B 34.8
(3)
A 		7.6
(-1.9)
A 		1.7
(-3)
A 		33.6
(2.8)
A 		33
C 27
(-3)
A 		40.6
(-0.6)
A 		30.9
(-2.3)
A 		61.7
(3)
A 		35
avr 24.1
(-0.8) 		18.4
(-1.8) 		12.3
(-3) 		44
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 21.5
(3)
A 		10.2
(-0.6)
A 		16.8
(1.5)
A 		4.1
(-2.5)
A 		7.5
(-1.4)
A 		2.6
(-3)
A 		19
B 12.7
(-0.1)
A 		21.3
(2.2)
A 		2.1
(-2.9)
A 		10.5
(-0.7)
A 		1.6
(-3)
A 		24.5
(3)
A 		23
C 1.3
(-3)
A 		5.1
(-1.1)
A 		1.3
(-3)
A 		13.6
(3)
A 		6.1
(-0.7)
A 		4.6
(-1.4)
A 		12
avr 11.8
(2.7) 		12.2
(3) 		6.7
(-1.6) 		9.4
(0.6) 		5.1
(-3) 		10.6
(1.6) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.8
(0.8)
A 		1.5
(-2.4)
A 		1.1
(-3)
A 		5.4
(3)
A 		4
B 11.1
(3)
A 		1.9
(-2.2)
A 		0.4
(-3)
A 		7.2
(0.8)
A 		11
C 8.9
(-3)
A 		11.7
(3)
A 		10.8
(1.1)
A 		10.4
(0.2)
A 		3
avr 7.9
(3) 		5
(-1.6) 		4.1
(-3) 		7.7
(2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4
(3)
A 		3.6
(2.3)
A 		3.7
(2.5)
A 		1
(-2.3)
A 		2.3
(-0)
A 		0.6
(-3)
A 		3
B 4.4
(-0.3)
A 		7.1
(1.6)
A 		0.5
(-3)
A 		2.8
(-1.4)
A 		0.7
(-2.9)
A 		9.1
(3)
A 		9
C 0.5
(-2.5)
A 		1.5
(-0)
A 		0.3
(-3)
A 		2.7
(3)
A 		2
(1.3)
A 		1.5
(-0)
A 		2
avr 3
(0.5) 		4.1
(3) 		1.5
(-3) 		2.2
(-1.4) 		1.7
(-2.5) 		3.7
(2.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15115
Sequence Type Exemplar sequence
Representative Public ID T20D4.1 NCBI
Target Description T20D4.1 /REP_DB=WormBase Gene ID /WP=CE13780 /TR=P91475 /GB=AAB37597.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071560(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071560 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-20) (srab-20) mRNA, complete cds. 10/11 None
GENEFINDER00000008866 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3428825:3430196:1 9/11 None
T20D4.1 ENSEMBL cdna:known chromosome:CEL140:V:3428825:3430234:1 gene:T20D4.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3429159-3430234(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-20
Ensembl T20D4.1
Entrez Gene 188637 Entrez gene
SwissProt P91475 EMBL-EBI
WormBase CE36507 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37597 Serpentine receptor, class ab (class a-like) protein 20 [Caenorhabditis elegans] ref|NP_503961.2| Serpentine Receptor, class AB (class A-like) family member (srab-20) [Caenorhabditis elegans] 1.0E-178
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-151
blast AAB37595 Serpentine receptor, class ab (class a-like) protein 21 [Caenorhabditis elegans] ref|NP_503959.2| Serpentine Receptor, class AB (class A-like) family member (srab-21) [Caenorhabditis elegans] 1.0E-147
blast AAB37597 Serpentine receptor, class ab (class a-like) protein 20 [Caenorhabditis elegans] ref|NP_503961.2| Serpentine Receptor, class AB (class A-like) family member (srab-20) [Caenorhabditis elegans] 1.0E-130
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-109
blast AAB37595 Serpentine receptor, class ab (class a-like) protein 21 [Caenorhabditis elegans] ref|NP_503959.2| Serpentine Receptor, class AB (class A-like) family member (srab-21) [Caenorhabditis elegans] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503961.2 7 24-46,53-75,103-125,146-168,188-210,243-265,275-296
T20D4.1 7 24-46,53-75,103-125,146-168,188-210,243-265,275-296
GENEFINDER00000008866 5 24-46,53-75,110-129,142-164,243-265
Sequence
Target Sequence 
>C. ELEGANS:181279_AT
atacgtcgccactgttaaatcaccaagttatgagcactctggatgcacatttggtatact
tatggcgatattgcaactttcaattgtgctcttttcaactgtcttttcattttccagttt
ttcatttgcggatccttttatggattactgtatttctttcaaaattggaaagtttggcag
cactgaagttattcattcattgggcgttgcaactcaaatttttggaagaatactgtttga
gtatatatttcaaaagaatgaagtgagtcgtgtgcaaaaaagtgtcaataaaattgtttt
catattcagtcaacttcaaattgtttcagaaactccgctcgaaacggttaacctcaacgc
tttcaaatcgatactctttgcagcaaaatatgaaatcaatggaaactttgaaggactatc
aattgaaaaacctacatacatttcattagtcgaattgaatgcttcctatccaatatatgc
tgtggtttctattgtaattctgttcaaaagagatcgatcgagcagggtgaagctcgagaa
gtctctggaaactcatgtgcaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGTCGCCACTGTTAAATCACCA 555 23 192 Antisense
CTCTTTTCAACTGTCTTTTCATTTT 685 229 280 Antisense
TGTCTTTTCATTTTCCAGTTTTTCA 45 559 291 Antisense
TTCATTCATTGGGCGTTGCAACTCA 14 689 383 Antisense
ATTGTTTCAGAAACTCCGCTCGAAA 233 3 511 Antisense
GCTCGAAACGGTTAACCTCAACGCT 693 297 528 Antisense
AACCTCAACGCTTTCAAATCGATAC 576 145 541 Antisense
AGTCGAATTGAATGCTTCCTATCCA 363 61 639 Antisense
TGCTGTGGTTTCTATTGTAATTCTG 42 583 669 Antisense
GCAGGGTGAAGCTCGAGAAGTCTCT 76 311 713 Antisense
GTCTCTGGAAACTCATGTGCAAGCG 159 471 732 Antisense
Sequence Source Affymetrix Proprietary Database