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[181276_at]

Description F36H9.1 /REP_DB=WormBase Gene ID /WP=CE24952 /TR=O16623 /GB=AAB66091.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 7.1
(-3)
A 		14.9
(-0.2)
A 		18.2
(1)
A 		23.9
(3)
A 		17
B 4.6
(-3)
A 		5.4
(-2.3)
A 		11.9
(3)
A 		4.9
(-2.8)
A 		7
C 11.6
(-2.5)
A 		6.2
(-2.8)
A 		3.6
(-3)
A 		93.6
(3)
A 		90
avr 7.8
(-3) 		8.8
(-2.8) 		11.2
(-2.4) 		40.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 53.1
(3)
A 		8.1
(-2.5)
A 		13.2
(-1.9)
A 		16.4
(-1.5)
A 		28.3
(-0)
A 		3.9
(-3)
A 		49
B 9.2
(-1.7)
A 		12
(-1.2)
A 		36.4
(3)
A 		12.4
(-1.1)
A 		1.6
(-3)
A 		1.7
(-3)
A 		35
C 3.3
(-2.9)
A 		15
(2.6)
A 		6.8
(-1.2)
A 		15.9
(3)
A 		7.6
(-0.9)
A 		3
(-3)
A 		13
avr 21.9
(3) 		11.7
(-0.2) 		18.8
(2) 		14.9
(0.8) 		12.5
(0) 		2.9
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.6
(-3)
A 		3.2
(-1.4)
A 		4.8
(3)
A 		3.5
(-0.5)
A 		2
B 1.5
(-1.2)
A 		1.3
(-1.9)
A 		2.7
(3)
A 		1
(-3)
A 		2
C 3.8
(-1.9)
A 		1.8
(-2.8)
A 		1.2
(-3)
A 		15.8
(3)
A 		15
avr 2.6
(-2.4) 		2.1
(-3) 		2.9
(-2) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.8
(3)
A 		2.9
(-1.7)
A 		2.9
(-1.7)
A 		4.1
(-0.8)
A 		8.5
(2.1)
A 		0.9
(-3)
A 		9
B 3.2
(-1.1)
A 		4
(-0.5)
A 		8.8
(3)
A 		3.3
(-1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		8
C 1.2
(-2.7)
A 		4.6
(3)
A 		1.7
(-1.8)
A 		3.2
(0.7)
A 		2.5
(-0.5)
A 		1
(-3)
A 		4
avr 4.7
(3) 		3.8
(1.6) 		4.5
(2.7) 		3.5
(1.2) 		3.9
(1.8) 		0.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15638
Sequence Type Exemplar sequence
Representative Public ID F36H9.1 NCBI
Target Description F36H9.1 /REP_DB=WormBase Gene ID /WP=CE24952 /TR=O16623 /GB=AAB66091.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071104 NCBI Caenorhabditis elegans F36H9.1 (F36H9.1) mRNA, complete cds. 11/11 None
SNAP00000002197 ENSEMBL cdna:SNAP chromosome:CEL140:V:1795918:1801155:1 9/11 None
GENEFINDER00000002205 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1794346:1799641:1 11/11 None
F36H9.1 ENSEMBL cdna:known chromosome:CEL140:V:1793876:1799522:1 gene:F36H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1793875-1799522(+) 94.72 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H9.1
Entrez Gene 185388 Entrez gene
SwissProt O16623 EMBL-EBI
WormBase CE36841 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4675 transmembrane receptor protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5024 transforming growth factor beta receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66091 Hypothetical protein F36H9.1 [Caenorhabditis elegans] ref|NP_503505.2| F36H9.1 [Caenorhabditis elegans] 0.0
blast AAB66090 Hypothetical protein F36H9.2 [Caenorhabditis elegans] ref|NP_503504.1| F36H9.2 [Caenorhabditis elegans] 4.0E-64
blast AAB66090 Hypothetical protein F36H9.2 [Caenorhabditis elegans] ref|NP_503504.1| F36H9.2 [Caenorhabditis elegans] 6.0E-61
blast CAE66778 Hypothetical protein CBG12135 [Caenorhabditis briggsae] 3.0E-60
blast CAE66778 Hypothetical protein CBG12135 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 4.9E-8
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.2E-29
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 4.9E-8
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.2E-29
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 6.8E-7
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.2E-29
Sequence
Target Sequence 
>C. ELEGANS:181276_AT
gccgacttatcggaactaacatgccagacaaatcgaaaaggacttgtttcgtgtttttgc
aacactgacaaatgcaatgatgattcgtttgaaattccaacagatgttgtgcttaccgta
ccgccagtcatgaaatgcttcgaagatgacttaaatgaagataattattgctatggacac
tactgcatatacgagcgtgatcttactcgaaatgaatttggcgatgtattcccgagaacc
gccaaacctagaagaggatgtagtgacccaaactacactcaagatttgtctcgtaaaaat
atgtgcaaaattgaaaacgattggctccaatgcatttgtgatacagagttctgcaatcga
gaacagaacattgaagtgccgttgggcaacgtgatatgctatttaagtaaaagagatcaa
tctgaaagaaccaagtactgcataggtcaaaagtgctatttattctacgaagacattaat
aatgtcaaagaaaagggatgttcaagcgttaatgacgaggctccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGACTTATCGGAACTAACATGCC 27 285 970 Antisense
GGACTTGTTTCGTGTTTTTGCAACA 553 525 1009 Antisense
ACAGATGTTGTGCTTACCGTACCGC 69 101 1069 Antisense
ACCGTACCGCCAGTCATGAAATGCT 582 87 1084 Antisense
TGGACACTACTGCATATACGAGCGT 460 547 1143 Antisense
ATTTGGCGATGTATTCCCGAGAACC 92 19 1185 Antisense
CCGAGAACCGCCAAACCTAGAAGAG 615 263 1201 Antisense
GTGACCCAAACTACACTCAAGATTT 691 481 1232 Antisense
GATTGGCTCCAATGCATTTGTGATA 678 435 1288 Antisense
AAAGTGCTATTTATTCTACGAAGAC 361 121 1419 Antisense
CAAGCGTTAATGACGAGGCTCCAGA 613 185 1472 Antisense
Sequence Source Affymetrix Proprietary Database