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[181275_at]

Description T23H2.4 /REP_DB=WormBase Gene ID /WP=CE14112 /TR=P91496 /GB=AAC48198.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 01      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 39
(-3)
P 		149
(2.4)
P 		161.2
(3)
P 		41.8
(-2.9)
A 		122
B 67.4
(-1.7)
A 		183.6
(3)
P 		183.9
(3)
P 		36.7
(-3)
A 		147
C 56.2
(-2.1)
P 		151.9
(2.7)
P 		158.2
(3)
P 		38.2
(-3)
A 		120
avr 54.2
(-2.3) 		161.5
(2.7) 		167.8
(3) 		38.9
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 73.5
(-2.3)
A 		195
(3)
P 		89.6
(-1.6)
P 		148.2
(1)
P 		118.7
(-0.3)
P 		56.3
(-3)
A 		139
B 107.2
(-0.6)
P 		178.1
(3)
P 		81.2
(-1.9)
A 		114.7
(-0.2)
P 		170.5
(2.6)
P 		58.9
(-3)
P 		119
C 62.8
(-3)
P 		174.5
(3)
P 		89.1
(-1.6)
P 		128.7
(0.5)
P 		108.6
(-0.5)
P 		90.7
(-1.5)
P 		112
avr 81.2
(-2.3) 		182.5
(3) 		86.6
(-2.1) 		130.5
(0.3) 		132.6
(0.4) 		68.6
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 14.2
(-1.7)
P 		32.3
(1.4)
P 		42.2
(3)
P 		6.1
(-3)
A 		36
B 21.5
(-0.8)
A 		45.3
(3)
P 		42.6
(2.6)
P 		7.8
(-3)
A 		38
C 18.6
(-1.5)
P 		43.7
(1.6)
P 		55.1
(3)
P 		6.4
(-3)
A 		49
avr 18.1
(-1.3) 		40.4
(2.1) 		46.6
(3) 		6.8
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 13.5
(-3)
A 		69.4
(3)
P 		19.5
(-2.4)
P 		37.6
(-0.4)
P 		35.8
(-0.6)
P 		13.7
(-3)
A 		56
B 37.3
(-0.9)
P 		59.3
(1.8)
P 		19.7
(-3)
A 		30.4
(-1.7)
P 		69.3
(3)
P 		22
(-2.7)
P 		50
C 23.3
(-2.9)
P 		53.3
(3)
P 		22.7
(-3)
P 		25.9
(-2.4)
P 		35.1
(-0.6)
P 		30.4
(-1.5)
P 		31
avr 24.7
(-2.4) 		60.7
(3) 		20.6
(-3) 		31.3
(-1.4) 		46.7
(0.9) 		22
(-2.8) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.336
Sequence Type Exemplar sequence
Representative Public ID T23H2.4 NCBI
Target Description T23H2.4 /REP_DB=WormBase Gene ID /WP=CE14112 /TR=P91496 /GB=AAC48198.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059455 NCBI Caenorhabditis elegans T23H2.4 (T23H2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000032989 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6462117:6465061:-1 11/11 None
T23H2.4 ENSEMBL cdna:known chromosome:CEL140:I:6462117:6465061:-1 gene:T23H2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032986 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6462045-6464990(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23H2.4
Entrez Gene 188817 Entrez gene
SwissProt P91496 EMBL-EBI
WormBase CE34377 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48198 Hypothetical protein T23H2.4 [Caenorhabditis elegans] ref|NP_491856.2| T23H2.4 [Caenorhabditis elegans] 0.0
blast CAE67194 Hypothetical protein CBG12630 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181275_AT
tgcaccatctttcattcaattacaaatgtttaatagtcaaggatctgtgacttctttatc
atttcgaaatattggttcaatgaatgaaaaagtgatatggactgaaaaagaggattcatc
aattcccgattcaactggaactcaaaatggatggaatcgagttttaatttcattggaatc
agttccaaaaggaattccagtaattctaattcttaaatctataactggtgcaaacgattt
tgtggctttctcctcaattgatctcgtcgatggagaatcaaagactttaacgtgtgatca
agtgacgtcaccagtccaaccacaatccaatcaattggttcgcctgacggctcttcagaa
tctaaaaatgttaccgattgaatcaattctttatcaaccaccaatatcaacaacttcacc
aatttcattgtttcctattcctccgactccttcaatttcatttaattcagatgaaaaacc
atcatctctagcttctcctgttggaatacttcctatatctccaactcttgtttcggctcg
tggaatcccaattttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACCATCTTTCATTCAATTACAA 607 577 897 Antisense
GATTCATCAATTCCCGATTCAACTG 569 431 1009 Antisense
TTTCTCCTCAATTGATCTCGTCGAT 670 671 1143 Antisense
CCAATCAATTGGTTCGCCTGACGGC 293 277 1223 Antisense
GCCTGACGGCTCTTCAGAATCTAAA 370 283 1238 Antisense
GAATCAATTCTTTATCAACCACCAA 389 327 1276 Antisense
CCAATTTCATTGTTTCCTATTCCTC 51 277 1315 Antisense
CCGACTCCTTCAATTTCATTTAATT 706 263 1339 Antisense
ATCTCTAGCTTCTCCTGTTGGAATA 174 31 1380 Antisense
GGAATACTTCCTATATCTCCAACTC 513 533 1399 Antisense
TTCGGCTCGTGGAATCCCAATTTTC 656 687 1428 Antisense
Sequence Source Affymetrix Proprietary Database