[Home] | [Total List]

[181274_at]

Description F40F12.4 /REP_DB=WormBase Gene ID /WP=CE00569 /TR=Q20214 /GB=CAA82936.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 33      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 3.6
(-3)
A 		46.9
(1.2)
A 		59.2
(2.4)
A 		65.7
(3)
A 		62
B 6.9
(-3)
A 		59.9
(3)
A 		45
(1.3)
P 		37
(0.4)
A 		53
C 3
(-3)
A 		24.7
(-0.1)
A 		36.4
(1.5)
A 		47.9
(3)
A 		45
avr 4.5
(-3) 		43.8
(2.2) 		46.9
(2.6) 		50.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 23.9
(-0.2)
A 		48.2
(2.9)
P 		49.2
(3)
P 		22.2
(-0.5)
A 		5
(-2.7)
A 		2.3
(-3)
A 		47
B 25.5
(-1.9)
A 		42.2
(0.2)
A 		50.5
(1.3)
A 		49.3
(1.2)
P 		63.7
(3)
A 		16.9
(-3)
A 		47
C 5.6
(-3)
A 		57.7
(2.8)
A 		18.1
(-1.6)
A 		59.5
(3)
A 		15.4
(-1.9)
A 		21.4
(-1.2)
A 		54
avr 18.3
(-2.2) 		49.4
(3) 		39.3
(1.3) 		43.7
(2) 		28
(-0.6) 		13.5
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.3
(-3)
A 		10.2
(0.8)
A 		15.5
(3)
A 		9.6
(0.5)
A 		14
B 2.2
(-3)
A 		14.8
(3)
A 		10.4
(0.9)
P 		7.9
(-0.3)
A 		13
C 1
(-3)
A 		7.1
(0.1)
A 		12.7
(3)
A 		8.1
(0.6)
A 		12
avr 1.5
(-3) 		10.7
(1.8) 		12.9
(3) 		8.5
(0.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.4
(-1.6)
A 		17.1
(3)
P 		10.7
(0.7)
P 		5.6
(-1.2)
A 		1.5
(-2.7)
A 		0.6
(-3)
A 		17
B 8.9
(-2.2)
A 		14
(-0.6)
A 		12.3
(-1.2)
A 		13.1
(-0.9)
P 		25.9
(3)
A 		6.3
(-3)
A 		20
C 2.1
(-3)
A 		17.6
(3)
A 		4.6
(-2)
A 		12
(0.8)
A 		5
(-1.9)
A 		7.2
(-1)
A 		16
avr 5.1
(-2.8) 		16.2
(3) 		9.2
(-0.7) 		10.2
(-0.1) 		10.8
(0.2) 		4.7
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181274_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6515
Sequence Type Exemplar sequence
Representative Public ID F40F12.4 NCBI
Target Description F40F12.4 /REP_DB=WormBase Gene ID /WP=CE00569 /TR=Q20214 /GB=CAA82936.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066793 NCBI Caenorhabditis elegans F40F12.4 (F40F12.4) mRNA, complete cds. 11/11 None
GENEFINDER00000010933 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9893047:9898815:1 11/11 None
SNAP00000010924 ENSEMBL cdna:SNAP chromosome:CEL140:III:9894712:9898318:1 10/11 None
F40F12.4 ENSEMBL cdna:known chromosome:CEL140:III:9893047:9898318:1 gene:F40F12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9893042-9898314(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F12.4
Entrez Gene 185552 Entrez gene
SwissProt Q7JMS6 EMBL-EBI
WormBase CE00569 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82936 Hypothetical protein F40F12.4 [Caenorhabditis elegans] ref|NP_499194.1| F40F12.4 [Caenorhabditis elegans] pir||S42833 F40F12.4 protein - Caenorhabditis elegans 0.0
blast CAE65090 Hypothetical protein CBG09949 [Caenorhabditis briggsae] 0.0
blast CAB07224 Hypothetical protein H03G16.2 [Caenorhabditis elegans] ref|NP_510504.2| H03G16.2 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:181274_AT
atggttggtggctttataattctcaaaaaaatcaaacttcggcaaccagctagtcacgag
acaaatgaaataaatgataaattcataaatatggcatcttcctctgattcttcaatttct
acaatttgtgaagcaattgtttgttcttttaatgaaacagaaccatgttcaaatatggca
attcaatcagattggaatattggaactggtccaattggtaatccattaactggagttaaa
ggagatgcttcttttcttccattcaatgaaaatggttcatatgcttacatctctggacca
caaatcaaatctcgccttcaaacgccatcatttaatgtggataaagctgtgacagttgta
ttttcctattataaggctgataaatcaagtcaattccaagcaattgtgaaaagagaaaat
aaagaagaaattgtagttttcgaagcaccaaaactaacaaggaattcacgaagatggttc
agggaaagtttgaatatttcagctggaaaatatgattatatcgcatttgaaatttccaat
ctccgacccaatcattatgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTGGTGGCTTTATAATTCTCA 347 51 1015 Antisense
TCAAACTTCGGCAACCAGCTAGTCA 382 629 1046 Antisense
AAATATGGCATCTTCCTCTGATTCT 272 117 1101 Antisense
CTTCCTCTGATTCTTCAATTTCTAC 126 219 1112 Antisense
GGAACTGGTCCAATTGGTAATCCAT 607 529 1216 Antisense
AAAGGAGATGCTTCTTTTCTTCCAT 530 121 1252 Antisense
TCATATGCTTACATCTCTGGACCAC 358 619 1291 Antisense
TGGACCACAAATCAAATCTCGCCTT 159 549 1308 Antisense
CGCCTTCAAACGCCATCATTTAATG 494 257 1327 Antisense
GCATTTGAAATTTCCAATCTCCGAC 133 309 1537 Antisense
AATCTCCGACCCAATCATTATGTTG 619 169 1552 Antisense
Sequence Source Affymetrix Proprietary Database