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[181273_at]

Description F42G2.5 /REP_DB=WormBase Gene ID /WP=CE10314 /TR=O17099 /GB=AAB70357.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 16      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 5
(-3)
A 		31.2
(-1.1)
A 		33.5
(-1)
A 		88.5
(3)
P 		84
B 7.8
(-3)
A 		36.1
(2.9)
A 		7.7
(-3)
A 		36.6
(3)
A 		29
C 6.3
(-2.9)
A 		4.5
(-3)
A 		43.5
(-0.5)
A 		96.4
(3)
P 		92
avr 6.4
(-3) 		23.9
(-1.4) 		28.2
(-1.1) 		73.8
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 9.8
(-3)
A 		44.3
(-1.6)
A 		126.7
(1.7)
P 		158
(3)
P 		68
(-0.6)
A 		65.3
(-0.8)
A 		148
B 10.4
(-3)
A 		11.8
(-2.9)
A 		49.5
(-0.5)
P 		66.2
(0.6)
P 		102.8
(3)
A 		52.2
(-0.3)
P 		92
C 3.4
(-3)
A 		57.5
(-1)
A 		81.5
(-0.1)
P 		165.6
(3)
P 		60.5
(-0.9)
A 		87
(0.1)
P 		162
avr 7.9
(-3) 		37.9
(-1.5) 		85.9
(0.8) 		129.9
(3) 		77.1
(0.4) 		68.2
(-0) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.8
(-3)
A 		6.8
(-0.3)
A 		8.8
(0.8)
A 		13
(3)
P 		11
B 2.5
(-2.4)
A 		8.9
(3)
A 		1.8
(-3)
A 		7.8
(2.1)
A 		7
C 2.1
(-2.7)
A 		1.3
(-3)
A 		15.2
(2.6)
A 		16.2
(3)
P 		15
avr 2.1
(-3) 		5.7
(-0.9) 		8.6
(0.8) 		12.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 1.8
(-3)
A 		15.7
(-0.8)
A 		27.6
(1)
P 		40.1
(3)
P 		20.5
(-0.1)
A 		15.9
(-0.8)
A 		38
B 3.6
(-3)
A 		3.9
(-3)
A 		12
(-1.7)
P 		17.5
(-0.8)
P 		41.8
(3)
A 		19.5
(-0.5)
P 		38
C 1.3
(-3)
A 		17.5
(0)
A 		20.7
(0.6)
P 		33.3
(3)
P 		19.6
(0.4)
A 		29.1
(2.2)
P 		32
avr 2.2
(-3) 		12.4
(-0.8) 		20.1
(0.8) 		30.3
(3) 		27.3
(2.4) 		21.5
(1.1) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5837
Sequence Type Exemplar sequence
Representative Public ID F42G2.5 NCBI
Target Description F42G2.5 /REP_DB=WormBase Gene ID /WP=CE10314 /TR=O17099 /GB=AAB70357.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061870 NCBI Caenorhabditis elegans F42G2.5 (F42G2.5) mRNA, complete cds. 11/11 None
SNAP00000009890 ENSEMBL cdna:SNAP chromosome:CEL140:II:2414217:2417972:-1 11/11 None
GENEFINDER00000009897 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2416412:2417972:-1 11/11 None
F42G2.5 ENSEMBL cdna:known chromosome:CEL140:II:2416412:2417972:-1 gene:F42G2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2416410-2417971(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G2.5
Entrez Gene 185673 Entrez gene
SwissProt O17099 EMBL-EBI
WormBase CE10314 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70357 Hypothetical protein F42G2.5 [Caenorhabditis elegans] ref|NP_494271.1| F42G2.5 [Caenorhabditis elegans] 0.0
blast T32285 hypothetical protein F42G2.4 - Caenorhabditis elegans 1.0E-174
blast AAT48621 Hypothetical protein F42G2.4b [Caenorhabditis elegans] ref|NP_872001.2| F42G2.4b [Caenorhabditis elegans] 1.0E-136
blast AAB66145 Hypothetical protein ZK1240.2 [Caenorhabditis elegans] ref|NP_494241.2| ZK1240.2 [Caenorhabditis elegans] 4.0E-55
blast B88072 protein ZK1240.2 [imported] - Caenorhabditis elegans 4.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-58
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-11
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 6.0E-39
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.9E-7
Sequence
Target Sequence 
>C. ELEGANS:181273_AT
actgtgttatcttatgtccattttgccggaatgaaaccaatgtgagcagtgtggcaagtc
ttcccaaaaactttgcattactgcaagcaattgatcagaaaactttacgagttccaccgt
tggaaatcgcaaagttaagacaacaactgagctgccagctctcaaaattggaggagcaag
ttagtaaaactgacaagagtattaaagctgttggcagagcccaactctcaaatttgaagg
atgggagggaatttcaagagagaaaggattcgatagtctcctactatgcttcaatacgag
aaactataaatgctttggaaaacgaggcgatcggaaaattacacaccatcgcagacatga
acgtttcaaagaatgcgttgcttgtggcagaactatcagaaatccttaaacatcagaatt
taaaaattgccgagttgaagttgtcgatggaaatggacgacgtagagcttgcgacaagat
ccttaaccgattcgggaacggaatgtgcagttgtaaaacctgccgttttagatgttgcac
tcacttttccggagatagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGTGTTATCTTATGTCCATTTTG 304 97 521 Antisense
GTGAGCAGTGTGGCAAGTCTTCCCA 252 483 562 Antisense
AAGACAACAACTGAGCTGCCAGCTC 285 153 657 Antisense
AAGCTGTTGGCAGAGCCCAACTCTC 120 149 725 Antisense
TAGTCTCCTACTATGCTTCAATACG 510 653 794 Antisense
GAAAATTACACACCATCGCAGACAT 708 351 854 Antisense
GAATGCGTTGCTTGTGGCAGAACTA 540 329 891 Antisense
ATGGACGACGTAGAGCTTGCGACAA 126 53 973 Antisense
GCGACAAGATCCTTAACCGATTCGG 79 289 991 Antisense
GCCGTTTTAGATGTTGCACTCACTT 33 285 1042 Antisense
TGCACTCACTTTTCCGGAGATAGAC 138 577 1056 Antisense
Sequence Source Affymetrix Proprietary Database