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[181272_s_at]

Description C18H2.2 /REP_DB=WormBase Gene ID /WP=CE01156 /TR=Q18103 /GB=AAA50667.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 65.5
(-0.2)
A 		87.2
(1.3)
A 		23.5
(-3)
A 		113.2
(3)
P 		90
B 88.4
(3)
P 		13.3
(-3)
A 		47.4
(-0.3)
A 		52.3
(0.1)
P 		75
C 77.3
(-0.7)
A 		23.4
(-3)
A 		37.9
(-2.4)
A 		161.1
(3)
P 		138
avr 77.1
(0.4) 		41.3
(-2.6) 		36.3
(-3) 		108.9
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 61.6
(0.2)
P 		59.2
(0.1)
P 		85.3
(1.9)
P 		48
(-0.7)
M 		15.8
(-3)
A 		100.9
(3)
P 		85
B 61.9
(0.7)
P 		67.2
(2.1)
P 		64.5
(1.4)
P 		71
(3)
A 		47
(-3)
P 		52.9
(-1.5)
P 		24
C 78
(3)
M 		61.4
(-0.1)
M 		70
(1.5)
A 		63.5
(0.3)
A 		45.7
(-3)
P 		65.1
(0.6)
P 		32
avr 67.2
(2) 		62.6
(1.3) 		73.3
(3) 		60.8
(1) 		36.2
(-3) 		73
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 23.8
(3)
A 		18.9
(1.3)
A 		6.1
(-3)
A 		16.6
(0.6)
P 		18
B 28.2
(3)
P 		3.3
(-3)
A 		11
(-1.1)
A 		11.2
(-1.1)
P 		25
C 25.6
(2.5)
A 		6.7
(-3)
A 		13.2
(-1.1)
A 		27.2
(3)
P 		21
avr 25.9
(3) 		9.6
(-3) 		10.1
(-2.8) 		18.3
(0.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.3
(-1)
P 		21.1
(1.9)
P 		18.6
(1.2)
P 		12.2
(-0.8)
M 		4.8
(-3)
A 		24.6
(3)
P 		20
B 21.5
(2.2)
P 		22.4
(3)
P 		15.7
(-3)
P 		18.8
(-0.2)
A 		19.1
(0)
P 		19.7
(0.6)
P 		7
C 28.9
(3)
M 		18.7
(-0.8)
M 		17.8
(-1.1)
A 		12.8
(-3)
A 		14.8
(-2.3)
P 		21.8
(0.4)
P 		16
avr 20.6
(2.1) 		20.7
(2.1) 		17.4
(-0) 		14.6
(-1.9) 		12.9
(-3) 		22
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181272_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6411
Sequence Type Exemplar sequence
Representative Public ID C18H2.2 NCBI
Target Description C18H2.2 /REP_DB=WormBase Gene ID /WP=CE01156 /TR=Q18103 /GB=AAA50667.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066274 NCBI Caenorhabditis elegans C18H2.2 (C18H2.2) mRNA, complete cds. 11/11 None
SNAP00000004536 ENSEMBL cdna:SNAP chromosome:CEL140:III:7679216:7680688:-1 11/11 None
GENEFINDER00000004550 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7679216:7682215:-1 11/11 None
SNAP00000011532 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4189932:4191728:-1 9/11 None
GENEFINDER00000011541 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4189932:4192924:-1 9/11 None
C18H2.2 ENSEMBL cdna:known chromosome:CEL140:III:7678943:7680780:-1 gene:C18H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7679213-7683258(-) 95.14 95.14
chrIV:4189937-4193974(-) 94.49 94.49
Public Domain and Genome References
Gene Title
Ensembl C18H2.2
Entrez Gene 176080 Entrez gene
SwissProt Q18103 EMBL-EBI
WormBase CE32132 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16740 transferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50667 Hypothetical protein C18H2.2 [Caenorhabditis elegans] ref|NP_498675.3| C18H2.2 [Caenorhabditis elegans] 0.0
blast AAQ01530 Hypothetical protein K06B9.4 [Caenorhabditis elegans] ref|NP_500510.3| K06B9.4 [Caenorhabditis elegans] 0.0
blast T29499 hypothetical protein K06B9.4 - Caenorhabditis elegans 0.0
blast AAA50667 Hypothetical protein C18H2.2 [Caenorhabditis elegans] ref|NP_498675.3| C18H2.2 [Caenorhabditis elegans] 1.0E-178
blast AAA50667 Hypothetical protein C18H2.2 [Caenorhabditis elegans] ref|NP_498675.3| C18H2.2 [Caenorhabditis elegans] 1.0E-171
Sequence
Target Sequence 
>C. ELEGANS:181272_S_AT
cgcttacggtcaacaactcttcaaattctgccaacagctgtggtgattccgaatcagaca
tttctgaatatacggatagtcgaagattgaggacgtctgaaaattctgacgatgaaaacg
aggagccccaatcagattactcaaacatcgacaacgtggaaaatgaaaattcagcgctgg
tcacatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTTACGGTCAACAACTCTTCAAA 492 253 1694 Antisense
AACTCTTCAAATTCTGCCAACAGCT 320 141 1708 Antisense
CTGCCAACAGCTGTGGTGATTCCGA 184 237 1721 Antisense
GTGATTCCGAATCAGACATTTCTGA 51 485 1736 Antisense
ACATTTCTGAATATACGGATAGTCG 109 105 1751 Antisense
GATTGAGGACGTCTGAAAATTCTGA 283 435 1778 Antisense
CTGACGATGAAAACGAGGAGCCCCA 166 237 1799 Antisense
AACGAGGAGCCCCAATCAGATTACT 55 145 1810 Antisense
GGAGCCCCAATCAGATTACTCAAAC 98 523 1815 Antisense
ATTACTCAAACATCGACAACGTGGA 212 3 1829 Antisense
TGAAAATTCAGCGCTGGTCACATCC 371 573 1857 Antisense
Sequence Source Affymetrix Proprietary Database