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[181271_s_at]

Description ZK381.5 /REP_DB=WormBase Gene ID /WP=CE26340 /TR=Q9GYF6 /GB=AAG00058.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_highest_nonorm > 50      6grp_total > 16      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 845
1 2 3 4 range
A 680.6
(0.4)
P 		430.5
(-2.2)
P 		349.3
(-3)
P 		933.3
(3)
P 		584
B 504
(-0.7)
P 		536.2
(-0.4)
P 		262.5
(-3)
P 		901.2
(3)
P 		639
C 698.2
(-0.2)
P 		370.5
(-2.8)
P 		343.9
(-3)
P 		1107
(3)
P 		763
avr 627.6
(-0.2) 		445.7
(-1.8) 		318.6
(-3) 		980.5
(3) 		662

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 590
1 2 3 4 5 6 range
A 576.6
(3)
P 		570.2
(2.8)
P 		381.6
(-1.7)
P 		354
(-2.4)
P 		327.8
(-3)
P 		480.3
(0.7)
P 		249
B 901.2
(3)
P 		618.7
(0.1)
P 		380.5
(-2.3)
P 		311.7
(-3)
P 		399.7
(-2.1)
P 		354.6
(-2.6)
P 		590
C 830
(3)
P 		679.7
(1.2)
P 		406.3
(-2.2)
P 		343.3
(-2.9)
P 		338.3
(-3)
P 		372.3
(-2.6)
P 		492
avr 769.3
(3) 		622.9
(1) 		389.5
(-2.3) 		336.3
(-3) 		355.3
(-2.7) 		402.4
(-2.1) 		433
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 247.8
(3)
P 		93.4
(-2.9)
P 		91.3
(-3)
P 		136.6
(-1.3)
P 		157
B 160.7
(1.6)
P 		132.4
(0.3)
P 		60.8
(-3)
P 		192
(3)
P 		131
C 231.1
(3)
P 		106.5
(-3)
P 		119.9
(-2.4)
P 		186.7
(0.9)
P 		125
avr 213.2
(3) 		110.8
(-2) 		90.7
(-3) 		171.8
(1) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 106.3
(-1.8)
P 		202.8
(3)
P 		83.1
(-3)
P 		89.8
(-2.7)
P 		98.9
(-2.2)
P 		116.9
(-1.3)
P 		120
B 313.6
(3)
P 		205.9
(0.2)
P 		92.4
(-2.7)
P 		82.6
(-3)
P 		162.4
(-0.9)
P 		132.2
(-1.7)
P 		231
C 307.7
(3)
P 		207.4
(0.5)
P 		103.4
(-2.1)
P 		69
(-3)
P 		109.5
(-2)
P 		124.6
(-1.6)
P 		239
avr 242.5
(3) 		205.4
(1.6) 		93
(-2.5) 		80.5
(-3) 		123.6
(-1.4) 		124.6
(-1.4) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181271_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9397
Sequence Type Exemplar sequence
Representative Public ID ZK381.5 NCBI
Target Description ZK381.5 /REP_DB=WormBase Gene ID /WP=CE26340 /TR=Q9GYF6 /GB=AAG00058.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171373(11), NM_171372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171373 NCBI Caenorhabditis elegans ZK381.5b (ZK381.5) mRNA, complete cds. 11/11 None
NM_171372 NCBI Caenorhabditis elegans ZK381.5a (ZK381.5) mRNA, complete cds. 11/11 None
SNAP00000022642 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6974601:6980572:-1 10/11 None
GENEFINDER00000022649 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6979012:6986919:-1 11/11 None
ZK381.5b ENSEMBL cdna:known chromosome:CEL140:IV:6978759:6983733:-1 gene:ZK381.5 11/11 None
ZK381.5a ENSEMBL cdna:known chromosome:CEL140:IV:6979012:6986919:-1 gene:ZK381.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6979017-6986925(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK381.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97990 Hypothetical protein ZK381.5b [Caenorhabditis elegans] ref|NP_741436.1| ZK381.5b [Caenorhabditis elegans] 0.0
blast AAM97989 Hypothetical protein ZK381.5a [Caenorhabditis elegans] ref|NP_741435.1| ZK381.5a [Caenorhabditis elegans] 0.0
blast CAE61783 Hypothetical protein CBG05744 [Caenorhabditis briggsae] 0.0
blast T29177 hypothetical protein ZK381.4 - Caenorhabditis elegans 0.0
blast AAG00057 P granule abnormality protein 1 [Caenorhabditis elegans] ref|NP_501077.1| P GranuLe abnormality family member (pgl-1) [Caenorhabditis elegans] sp|Q9TZQ3|PGL1_CAEEL P granule abnormality protein 1 gb|AAC36100.1| PGL-1 [Caenorhabditis elegans] 0.0
blast AAC17755 Hypothetical protein C18G1.4a [Caenorhabditis elegans] ref|NP_504278.1| C18G1.4a [Caenorhabditis elegans] dbj|BAC87886.1| PGL-3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.5E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-8
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.6E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-8
Pfam IPR010442 EMBL-EBI PET 5.1E-52
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-8
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.3E-13
Sequence
Target Sequence 
>C. ELEGANS:181271_S_AT
gcgagttggtgaatccctattttgtggatatcaaacatgtggtggagaagacgaagagtt
gcttgatgaggatcggttgggttcgccgcatcgaaaagtgacacaaaaatccacaaaagt
ggttcgtatcccagcttctccgagggttgcaccacgtcatcctcatgtcattcaacagaa
tttgacgacgacaatgacgattcagaaaccaagtgtggttattcaaaatcaacgaccaaa
accaccacaaagagctcctccacctcctccatcagaaaatatatatgaaactgttctacc
atgttcatcgaataatagtccaaatttcgataagaagtactctcatgagcttcctacatc
tcctaaccaccataattactactcaaaaacaccaaataatctgcttactgggtatcccga
aatggatggatatagtacatcatcttcgtcggattcagatgatgaacagctttacatttc
aaatattatggcagccgcctcgttgagtagagttcctgcaaagtcttccagtcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGTTGGTGAATCCCTATTTTGT 315 287 858 Antisense
GATGAGGATCGGTTGGGTTCGCCGC 438 405 922 Antisense
AAAAGTGGTTCGTATCCCAGCTTCT 604 131 972 Antisense
CGTCATCCTCATGTCATTCAACAGA 261 247 1012 Antisense
GAAACTGTTCTACCATGTTCATCGA 679 357 1144 Antisense
AAGTACTCTCATGAGCTTCCTACAT 642 155 1192 Antisense
TACATCTCCTAACCACCATAATTAC 582 643 1212 Antisense
TAATCTGCTTACTGGGTATCCCGAA 508 633 1254 Antisense
GTACATCATCTTCGTCGGATTCAGA 251 461 1292 Antisense
AAATATTATGGCAGCCGCCTCGTTG 612 115 1338 Antisense
GTTCCTGCAAAGTCTTCCAGTCGTA 501 441 1369 Antisense
Sequence Source Affymetrix Proprietary Database