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[181270_at]

Description F15E6.8 /REP_DB=WormBase Gene ID /WP=CE16997 /TR=O44494 /GB=AAB92059.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 43      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 9
(-2.3)
A 		58.9
(3)
A 		30.9
(0)
A 		2.3
(-3)
A 		57
B 4.2
(-3)
A 		5.5
(-2.6)
A 		6.5
(-2.4)
A 		26
(3)
A 		22
C 30.4
(0.4)
A 		48.9
(3)
A 		15.6
(-1.7)
A 		6.7
(-3)
A 		42
avr 14.5
(-2.4) 		37.8
(3) 		17.7
(-1.6) 		11.7
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 13.9
(-3)
A 		51.9
(-0.1)
A 		61.8
(0.7)
A 		24.3
(-2.2)
A 		39
(-1.1)
A 		92.5
(3)
P 		79
B 32
(-0.8)
A 		22.2
(-1.8)
A 		30.8
(-0.9)
A 		10
(-3)
A 		23.4
(-1.7)
A 		70.4
(3)
P 		60
C 45.4
(-1.3)
A 		40.5
(-1.6)
A 		9.1
(-3)
A 		9.1
(-3)
A 		38.4
(-1.7)
A 		140.7
(3)
P 		132
avr 30.4
(-1.9) 		38.2
(-1.4) 		33.9
(-1.7) 		14.5
(-3) 		33.6
(-1.7) 		101.2
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.3
(-1.6)
A 		12.8
(3)
A 		8.1
(0.7)
A 		0.3
(-3)
A 		13
B 1.3
(-3)
A 		1.4
(-2.9)
A 		1.5
(-2.7)
A 		5.5
(3)
A 		4
C 10.1
(1.2)
A 		14
(3)
A 		5.4
(-1)
A 		1.1
(-3)
A 		13
avr 4.9
(-0.8) 		9.4
(3) 		5
(-0.7) 		2.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 2.6
(-3)
A 		18.5
(1.8)
A 		13.5
(0.3)
A 		6.2
(-1.9)
A 		11.8
(-0.2)
A 		22.5
(3)
P 		20
B 11.1
(-0.9)
A 		7.4
(-1.8)
A 		7.5
(-1.8)
A 		2.7
(-3)
A 		9.5
(-1.3)
A 		26.2
(3)
P 		24
C 16.8
(-1)
A 		12.3
(-1.6)
A 		2.3
(-2.9)
A 		1.8
(-3)
A 		12.4
(-1.6)
A 		47.1
(3)
P 		45
avr 10.2
(-1.6) 		12.7
(-1.1) 		7.8
(-2.1) 		3.6
(-3) 		11.2
(-1.4) 		31.9
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181270_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10364
Sequence Type Exemplar sequence
Representative Public ID F15E6.8 NCBI
Target Description F15E6.8 /REP_DB=WormBase Gene ID /WP=CE16997 /TR=O44494 /GB=AAB92059.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068133 NCBI Caenorhabditis elegans F15E6.8 (F15E6.8) mRNA, complete cds. 11/11 None
SNAP00000035363 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4290289:4290544:-1 11/11 None
GENEFINDER00000035375 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4290289:4290544:-1 11/11 None
F15E6.8 ENSEMBL cdna:known chromosome:CEL140:IV:4290289:4290544:-1 gene:F15E6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037027 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037049 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3895190-3895445(+) 93.33 93.33
chrIV:4290294-4290550(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E6.8
Entrez Gene 184536 Entrez gene
SwissProt O44494 EMBL-EBI
WormBase CE16997 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500534.1 2 2-24,46-68
F15E6.8 2 2-24,46-68
SNAP00000035363 2 2-24,46-68
GENEFINDER00000035375 2 2-24,46-68
Sequence
Target Sequence 
>C. ELEGANS:181270_AT
tcctttgcaatctcattgttctcctcggccttattgctatggccactgcacaaatcggac
tcaacactggattgggactcggaccagctggaggaaatatgtatggaaatggatatggaa
accaaggagcctacggaaatgccggtgttggagtcaatccaggtgttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTTGCAATCTCATTGTTCTCCT 51 593 23 Antisense
TCTCCTCGGCCTTATTGCTATGGCC 165 611 42 Antisense
GCCTTATTGCTATGGCCACTGCACA 43 281 50 Antisense
ATTGCTATGGCCACTGCACAAATCG 579 5 55 Antisense
ACTGCACAAATCGGACTCAACACTG 590 97 67 Antisense
GGACTCAACACTGGATTGGGACTCG 161 525 79 Antisense
CACTGGATTGGGACTCGGACCAGCT 319 199 87 Antisense
GATATGGAAACCAAGGAGCCTACGG 629 425 134 Antisense
GGAGCCTACGGAAATGCCGGTGTTG 398 519 148 Antisense
CGGAAATGCCGGTGTTGGAGTCAAT 20 205 156 Antisense
GTGTTGGAGTCAATCCAGGTGTTGG 433 483 167 Antisense
Sequence Source Affymetrix Proprietary Database