[Home] | [Total List]

[181268_at]

Description E02H9.1 /REP_DB=WormBase Gene ID /WP=CE09118 /TR=Q9TZ94 /GB=AAC68767.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.2
(-3)
A 		9.4
(-1.3)
A 		3.6
(-2.7)
A 		28
(3)
A 		26
B 3.8
(-2.7)
A 		21.6
(3)
A 		2.8
(-3)
A 		3.8
(-2.7)
A 		19
C 22.5
(1.6)
P 		24.8
(2.7)
A 		12.3
(-3)
A 		25.5
(3)
A 		13
avr 9.5
(-1.5) 		18.6
(2.8) 		6.2
(-3) 		19.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.5
(1.1)
A 		3.6
(-2.5)
A 		10
(1.4)
A 		12.7
(3)
A 		2.8
(-3)
A 		6.6
(-0.7)
A 		10
B 2.2
(-3)
A 		2.8
(-2.8)
A 		15
(0.9)
A 		22.1
(3)
A 		2.9
(-2.8)
A 		7
(-1.6)
A 		20
C 1.1
(-3)
A 		2.1
(-2.8)
A 		6.4
(-1.7)
A 		4.7
(-2.1)
A 		25.9
(3)
A 		5.9
(-1.8)
A 		25
avr 4.3
(-2.1) 		2.8
(-3) 		10.5
(1.4) 		13.2
(3) 		10.5
(1.4) 		6.5
(-0.9) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.8
(-3)
A 		2
(-0.8)
A 		0.9
(-2.8)
A 		4.1
(3)
A 		3
B 1.2
(-2.3)
A 		5.3
(3)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		5
C 7.5
(3)
P 		7.1
(2.3)
A 		4.3
(-3)
A 		4.3
(-3)
A 		3
avr 3.2
(-0.4) 		4.8
(3) 		2
(-3) 		3.1
(-0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.8
(-0.7)
A 		1.3
(-2)
A 		2.2
(0.4)
A 		3.2
(3)
A 		0.9
(-3)
A 		1.6
(-1.2)
A 		2
B 0.8
(-3)
A 		0.9
(-2.9)
A 		3.6
(0.4)
A 		5.8
(3)
A 		1.2
(-2.5)
A 		2.6
(-0.8)
A 		5
C 0.4
(-3)
A 		0.7
(-2.8)
A 		1.6
(-2.1)
A 		0.9
(-2.6)
A 		8.4
(3)
A 		2
(-1.8)
A 		8
avr 1
(-3) 		1
(-3) 		2.5
(0.6) 		3.3
(2.5) 		3.5
(3) 		2.1
(-0.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181268_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6011
Sequence Type Exemplar sequence
Representative Public ID E02H9.1 NCBI
Target Description E02H9.1 /REP_DB=WormBase Gene ID /WP=CE09118 /TR=Q9TZ94 /GB=AAC68767.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065163 NCBI Caenorhabditis elegans E02H9.1 (E02H9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000038966 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2468474:2469337:1 10/11 None
E02H9.1 ENSEMBL cdna:known chromosome:CEL140:III:2468474:2469431:1 gene:E02H9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038956 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2468473-2469431(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02H9.1
Entrez Gene 183998 Entrez gene
SwissProt Q9TZ94 EMBL-EBI
WormBase CE09118 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68767 Hypothetical protein E02H9.1 [Caenorhabditis elegans] ref|NP_497564.1| E02H9.1 [Caenorhabditis elegans] 4.0E-77
blast AAC68767 Hypothetical protein E02H9.1 [Caenorhabditis elegans] ref|NP_497564.1| E02H9.1 [Caenorhabditis elegans] 2.0E-59
blast CAE66415 Hypothetical protein CBG11683 [Caenorhabditis briggsae] 7.0E-15
blast AAC68774 Hypothetical protein E02H9.9 [Caenorhabditis elegans] ref|NP_497563.1| E02H9.9 [Caenorhabditis elegans] 9.0E-15
blast AAC68774 Hypothetical protein E02H9.9 [Caenorhabditis elegans] ref|NP_497563.1| E02H9.9 [Caenorhabditis elegans] 2.0E-14
blast CAE66415 Hypothetical protein CBG11683 [Caenorhabditis briggsae] 7.0E-13
Sequence
Target Sequence 
>C. ELEGANS:181268_AT
aaattctacttcttctagtctcaattttacctttaacatattccataagaacttcaaaat
ggcatttcagtgggaaactactatgcccattatacacatttaagtatcaccttgaggttt
ttgaagaggattacttccgaaaaaccgatgatttgctgactaatcagacagaggtgagct
ctatcagcccgcatctttataaggtggacgcagaggaaacggatgatggattggattttg
ggcgacacttcgaaatctacatgctcatcatccacgactgcaatccagacagatatgtga
agtcactgaaagtcgattggggaaagtaccatattgatatcgagtttgttacattttatg
cattgaaatttgaaattttcagtgaagtcagcgaggtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCTACTTCTTCTAGTCTCAAT 39 117 26 Antisense
TCTAGTCTCAATTTTACCTTTAACA 66 615 39 Antisense
GGAAACTACTATGCCCATTATACAC 561 527 98 Antisense
ACACATTTAAGTATCACCTTGAGGT 705 109 119 Antisense
GAGGATTACTTCCGAAAAACCGATG 299 381 151 Antisense
AAAAACCGATGATTTGCTGACTAAT 591 129 165 Antisense
GACAGAGGTGAGCTCTATCAGCCCG 71 367 192 Antisense
CTATCAGCCCGCATCTTTATAAGGT 83 225 206 Antisense
GATTGGATTTTGGGCGACACTTCGA 578 435 254 Antisense
CACGACTGCAATCCAGACAGATATG 6 201 298 Antisense
TTTTCAGTGAAGTCAGCGAGGTCAA 340 671 401 Antisense
Sequence Source Affymetrix Proprietary Database