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[181267_at] 7TM receptor, sre family

Description K02E11.2 /REP_DB=WormBase Gene ID /WP=CE11646 /TR=Q21142 /GB=CAB01220.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 11      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 22.9
(-1.4)
A 		4.4
(-3)
A 		4.6
(-3)
A 		75.3
(3)
A 		71
B 25.5
(-3)
A 		32.2
(0.7)
A 		36.4
(3)
A 		33
(1.1)
A 		11
C 23.2
(-2.3)
A 		34.5
(-1.5)
A 		11.5
(-3)
A 		106.3
(3)
P 		95
avr 23.9
(-2.3) 		23.7
(-2.3) 		17.5
(-3) 		71.5
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 29.3
(2.2)
A 		14.9
(-1.1)
A 		18.4
(-0.3)
A 		33
(3)
A 		16.3
(-0.8)
A 		6.8
(-3)
A 		26
B 21.9
(-0.7)
A 		12.3
(-2.6)
A 		40.3
(3)
A 		16.9
(-1.7)
A 		22.1
(-0.6)
M 		10.3
(-3)
A 		30
C 11.3
(-0.5)
A 		25.1
(3)
A 		18.2
(1.2)
A 		20
(1.7)
A 		21.7
(2.1)
A 		1.5
(-3)
A 		24
avr 20.8
(1.5) 		17.4
(0.5) 		25.6
(3) 		23.3
(2.3) 		20
(1.3) 		6.2
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.4
(1.5)
A 		0.9
(-3)
A 		1.2
(-2.8)
A 		11
(3)
A 		10
B 8.1
(1.7)
A 		7.9
(0.9)
A 		8.4
(3)
A 		7
(-3)
A 		1
C 7.7
(-1.4)
A 		9.9
(-0.5)
A 		4
(-3)
A 		17.9
(3)
P 		14
avr 8.1
(-0.1) 		6.2
(-1.6) 		4.5
(-3) 		12
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.4
(0.3)
A 		5.3
(0.2)
A 		4
(-0.9)
A 		8.4
(3)
A 		4.9
(-0.1)
A 		1.7
(-3)
A 		7
B 7.6
(0.8)
A 		4.1
(-2.7)
A 		9.8
(3)
A 		4.5
(-2.3)
A 		9
(2.2)
M 		3.8
(-3)
A 		6
C 4.2
(0.1)
A 		7.7
(3)
A 		4.6
(0.4)
A 		4
(-0.1)
A 		7
(2.4)
A 		0.5
(-3)
A 		7
avr 5.7
(1.4) 		5.7
(1.4) 		6.1
(1.9) 		5.6
(1.3) 		7
(3) 		2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13576
Sequence Type Exemplar sequence
Representative Public ID K02E11.2 NCBI
Target Description K02E11.2 /REP_DB=WormBase Gene ID /WP=CE11646 /TR=Q21142 /GB=CAB01220.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074121 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-7) (sre-7) mRNA, complete cds. 11/11 None
GENEFINDER00000039269 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14244781:14248627:1 11/11 None
K02E11.2 ENSEMBL cdna:known chromosome:CEL140:V:14246792:14248692:1 gene:K02E11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039260 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14246791-14248692(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-7
Ensembl K02E11.2
Entrez Gene 186893 Entrez gene
SwissProt Q21142 EMBL-EBI
WormBase CE11646 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01220 Hypothetical protein K02E11.2 [Caenorhabditis elegans] ref|NP_506522.1| Serpentine Receptor, class E (epsilon) family member (sre-7) [Caenorhabditis elegans] 0.0
blast CAB01220 Hypothetical protein K02E11.2 [Caenorhabditis elegans] ref|NP_506522.1| Serpentine Receptor, class E (epsilon) family member (sre-7) [Caenorhabditis elegans] 1.0E-168
blast CAE60997 Hypothetical protein CBG04734 [Caenorhabditis briggsae] 1.0E-157
blast CAE60997 Hypothetical protein CBG04734 [Caenorhabditis briggsae] 1.0E-139
blast CAB01186 Hypothetical protein F40G12.1 [Caenorhabditis elegans] ref|NP_506528.1| Serpentine Receptor, class E (epsilon) family member (sre-8) [Caenorhabditis elegans] sp|Q20249|SRE8_CAEEL Serpentine receptor class epsilon-8 (Protein sre-8) 1.0E-138
blast CAB01186 Hypothetical protein F40G12.1 [Caenorhabditis elegans] ref|NP_506528.1| Serpentine Receptor, class E (epsilon) family member (sre-8) [Caenorhabditis elegans] sp|Q20249|SRE8_CAEEL Serpentine receptor class epsilon-8 (Protein sre-8) 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.6E-112
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 2.0E-95
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506522.1 7 37-59,66-88,98-120,141-163,173-195,231-248,263-285
K02E11.2 7 37-59,66-88,98-120,141-163,173-195,231-248,263-285
GENEFINDER00000039269 7 111-133,140-162,172-194,215-237,247-269,305-322,337-359
Sequence
Target Sequence 
>C. ELEGANS:181267_AT
atgggtttctcttataattctttcaatttttcatccactggtttttgcatcagcatttgc
gtatattcaatgctggctacccgtggtatttcatgtcatttctttttttgttgtaaatat
tattggatacgtcggagttcagatttgttttctgtacaatacaaaacgatacaagctatt
ctcccaaaagcccagaatgacaacatatggcttgagcgagcggtttcaacttgctgaaaa
tattaaaatgtgtaaggttctaaaaaaagtgcaaggctcaattcttctcttcaacgttgg
atgttcatcaattcttctgatggatagcttcgaggttgacattctgataacctatgcttc
atatgttgcattcaactttttggcattagtatacggaattactatacctattattgtgca
cgttgtattacctgaatggcagaaggagtcacggagattgattcacacctgtttctgtcg
atcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGTTTCTCTTATAATTCTTTCA 644 49 435 Antisense
TCATCCACTGGTTTTTGCATCAGCA 519 619 465 Antisense
GCGTATATTCAATGCTGGCTACCCG 672 289 493 Antisense
GCTACCCGTGGTATTTCATGTCATT 679 301 510 Antisense
CAAGCTATTCTCCCAAAAGCCCAGA 603 185 606 Antisense
ATGGCTTGAGCGAGCGGTTTCAACT 438 51 641 Antisense
TGCAAGGCTCAATTCTTCTCTTCAA 279 577 704 Antisense
GGATAGCTTCGAGGTTGACATTCTG 367 511 756 Antisense
TATTGTGCACGTTGTATTACCTGAA 260 665 846 Antisense
GAGTCACGGAGATTGATTCACACCT 290 399 880 Antisense
TTCACACCTGTTTCTGTCGATCGAA 13 687 896 Antisense
Sequence Source Affymetrix Proprietary Database