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[181264_at]

Description F16F9.1 /REP_DB=WormBase Gene ID /WP=CE09440 /TR=Q94184 /GB=AAB07690.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 05      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 51      6grp_total > 04      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 825
1 2 3 4 range
A 1031
(3)
P 		329.8
(-2.1)
P 		206.5
(-3)
P 		412.3
(-1.5)
P 		825
B 763.3
(3)
P 		398.4
(-1.4)
P 		264.7
(-3)
P 		420.5
(-1.1)
P 		499
C 819.2
(3)
P 		336.5
(-1.9)
P 		227
(-3)
P 		503.9
(-0.2)
P 		592
avr 871.2
(3) 		354.9
(-1.9) 		232.7
(-3) 		445.6
(-1) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 829.7
(3)
P 		578
(0.4)
P 		507.2
(-0.3)
P 		455.1
(-0.9)
P 		495.7
(-0.5)
P 		248.9
(-3)
P 		581
B 708.2
(3)
P 		657.2
(2.2)
P 		519.9
(0.1)
P 		521.6
(0.1)
P 		409.2
(-1.6)
P 		317.4
(-3)
P 		391
C 708.7
(2.8)
P 		718.5
(3)
P 		496.5
(-0.8)
P 		526.1
(-0.3)
P 		493.7
(-0.9)
P 		372.3
(-3)
P 		346
avr 748.9
(3) 		651.2
(1.7) 		507.9
(-0.3) 		500.9
(-0.4) 		466.2
(-0.9) 		312.9
(-3) 		436
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 375.4
(3)
P 		71.6
(-2.7)
P 		54
(-3)
P 		60.4
(-2.9)
P 		321
B 243.4
(3)
P 		98.4
(-1.8)
P 		61.3
(-3)
P 		89.6
(-2.1)
P 		182
C 271.2
(3)
P 		96.8
(-2.4)
P 		79.1
(-3)
P 		85
(-2.8)
P 		192
avr 296.7
(3) 		88.9
(-2.4) 		64.8
(-3) 		78.3
(-2.7) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 152.9
(0.8)
P 		205.6
(3)
P 		110.5
(-0.9)
P 		115.4
(-0.7)
P 		149.6
(0.7)
P 		60.6
(-3)
P 		145
B 246.4
(3)
P 		218.8
(1.7)
P 		126.3
(-2.6)
P 		138.2
(-2.1)
P 		166.3
(-0.8)
P 		118.4
(-3)
P 		128
C 262.7
(3)
P 		219.2
(1.3)
P 		126.4
(-2.2)
P 		105.8
(-3)
P 		159.8
(-0.9)
P 		124.6
(-2.3)
P 		157
avr 220.7
(3) 		214.5
(2.7) 		121.1
(-2) 		119.8
(-2.1) 		158.6
(-0.1) 		101.2
(-3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17191
Sequence Type Exemplar sequence
Representative Public ID F16F9.1 NCBI
Target Description F16F9.1 /REP_DB=WormBase Gene ID /WP=CE09440 /TR=Q94184 /GB=AAB07690.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077033(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077033 NCBI Caenorhabditis elegans F16F9.1 (F16F9.1) mRNA, complete cds. 10/11 None
GENEFINDER00000000526 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8447211:8449872:1 10/11 None
F16F9.1 ENSEMBL cdna:known chromosome:CEL140:X:8447211:8450343:1 gene:F16F9.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000507 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8447209-8449871(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16F9.1
Entrez Gene 184573 Entrez gene
SwissProt Q94184 EMBL-EBI
WormBase CE30955 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07690 Hypothetical protein F16F9.1 [Caenorhabditis elegans] ref|NP_509434.2| F16F9.1 [Caenorhabditis elegans] 4.0E-79
blast CAE74902 Hypothetical protein CBG22771 [Caenorhabditis briggsae] 2.0E-69
blast CAE69541 Hypothetical protein CBG15750 [Caenorhabditis briggsae] 2.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509434.2 1 111-133
F16F9.1 1 111-133
GENEFINDER00000000526 1 111-133
Sequence
Target Sequence 
>C. ELEGANS:181264_AT
cctcctccaccatacgaagagcagaacaatcgaaatgcaaaaaaggaatcaacaatggga
acgccggaacaccactacaaagtgtcaccaccgccatttgtcccactaactcaaccgaca
gtcattgacgtcgaacaactacaaaatgtggttcttcctggtggacaacccaacccgaca
gtagttatcgtaacgactccaaagccagccccctcatttgccagttatgagactacatgc
tacagttgtgggctaatgagcttttcagaactcaatacagttctgaccttaccaaaatac
gtacatacccttccgaaatttgtcatcggctcactaacgtggatagtcttcattctagtc
ctcatttgtttcttcccacttgcttttgttccattttgcctcgacagttgcaaagatgct
catcactactgtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCCTCCACCATACGAAGAGCAGA 69 267 52 Antisense
CAATGGGAACGCCGGAACACCACTA 203 183 104 Antisense
TGTGGTTCTTCCTGGTGGACAACCC 271 555 198 Antisense
TTATCGTAACGACTCCAAAGCCAGC 372 679 236 Antisense
GCCCCCTCATTTGCCAGTTATGAGA 349 285 259 Antisense
AATACAGTTCTGACCTTACCAAAAT 29 173 325 Antisense
GTACATACCCTTCCGAAATTTGTCA 657 457 352 Antisense
TTTGTCATCGGCTCACTAACGTGGA 358 667 370 Antisense
GATAGTCTTCATTCTAGTCCTCATT 511 425 393 Antisense
CACTTGCTTTTGTTCCATTTTGCCT 139 197 428 Antisense
CAAAGATGCTCATCACTACTGTCCG 491 287 462 Antisense
Sequence Source Affymetrix Proprietary Database