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[181263_at]

Description C01B7.3 /REP_DB=WormBase Gene ID /WP=CE06727 /TR=Q17546 /GB=AAA96112.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 17
(-0.3)
A 		7.9
(-2.3)
A 		4.6
(-3)
A 		31.7
(3)
A 		27
B 2.3
(-3)
A 		11.7
(-1.6)
A 		43.4
(3)
A 		7.5
(-2.2)
A 		41
C 7
(-3)
A 		7.5
(-2.4)
A 		8
(-1.8)
A 		11.8
(3)
A 		5
avr 8.8
(-3) 		9
(-2.9) 		18.7
(3) 		17
(2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 38.5
(3)
A 		2.4
(-3)
A 		4.6
(-2.6)
A 		6
(-2.4)
A 		7.2
(-2.2)
A 		5.3
(-2.5)
A 		36
B 6
(2)
A 		4.7
(0.6)
A 		6.9
(3)
A 		4.2
(-0)
A 		1.5
(-3)
A 		6.9
(3)
A 		5
C 6
(-2)
A 		4
(-2.5)
A 		4.6
(-2.3)
A 		3.8
(-2.5)
A 		26.7
(3)
A 		1.9
(-3)
A 		25
avr 16.8
(3) 		3.7
(-3) 		5.4
(-2.2) 		4.7
(-2.5) 		11.8
(0.7) 		4.7
(-2.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.2
(3)
A 		1.7
(-2.4)
A 		1.2
(-3)
A 		4.6
(1.1)
A 		5
B 0.7
(-3)
A 		2.9
(-1.6)
A 		10.1
(3)
A 		1.6
(-2.4)
A 		9
C 2.3
(-0.8)
A 		2.2
(-1.5)
A 		2.8
(3)
A 		2
(-3)
A 		1
avr 3.1
(-1) 		2.3
(-3) 		4.7
(3) 		2.7
(-2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 7.1
(3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		1.5
(-2.4)
A 		2.2
(-1.7)
A 		1.3
(-2.6)
A 		6
B 2.1
(1.5)
A 		1.6
(0)
A 		1.7
(0.3)
A 		1.1
(-1.5)
A 		0.6
(-3)
A 		2.6
(3)
A 		2
C 2.2
(-1.9)
A 		1.2
(-2.6)
A 		1.2
(-2.6)
A 		0.8
(-2.9)
A 		8.6
(3)
A 		0.7
(-3)
A 		8
avr 3.8
(3) 		1.2
(-2.8) 		1.3
(-2.6) 		1.1
(-3) 		3.8
(3) 		1.5
(-2.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11313
Sequence Type Exemplar sequence
Representative Public ID C01B7.3 NCBI
Target Description C01B7.3 /REP_DB=WormBase Gene ID /WP=CE06727 /TR=Q17546 /GB=AAA96112.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072862 NCBI Caenorhabditis elegans C01B7.3 (C01B7.3) mRNA, complete cds. 11/11 None
C01B7.3 ENSEMBL cdna:known chromosome:CEL140:V:8786009:8786752:-1 gene:C01B7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8786009-8786753(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B7.3
Entrez Gene 182057 Entrez gene
SwissProt Q17546 EMBL-EBI
WormBase CE06727 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96112 Hypothetical protein C01B7.3 [Caenorhabditis elegans] ref|NP_505263.1| C01B7.3 [Caenorhabditis elegans] 7.0E-66
Sequence
Target Sequence 
>C. ELEGANS:181263_AT
tgaaggttgtcaccaaaatttttagaaaaaaacaggagatagatgagtgggtggaagtta
tcgtgtatctaaaatggtgtcttcttttgttgaccgaaattattattcagactacaagaa
ataaaagttgcataaccacaatccaacattttaattttgtgtcgaattgggggattctcc
tcgccgcgagaattcatagaatcatccaaagagctcacttctcacacggcaccaaaacat
gttgtgataaagctgataagatagcgattcagatgactatgaaaagtgagaaaggaggag
ctcttcttctcttcaaaatggggattagatgggagaccggagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGGTTGTCACCAAAATTTTTAG 700 333 32 Antisense
GTGGGTGGAAGTTATCGTGTATCTA 355 489 78 Antisense
CGTGTATCTAAAATGGTGTCTTCTT 85 245 93 Antisense
GTCTTCTTTTGTTGACCGAAATTAT 92 467 110 Antisense
GCATAACCACAATCCAACATTTTAA 628 307 161 Antisense
ATTCTCCTCGCCGCGAGAATTCATA 157 11 205 Antisense
CCTCGCCGCGAGAATTCATAGAATC 563 267 210 Antisense
CATAGAATCATCCAAAGAGCTCACT 278 211 226 Antisense
ACTTCTCACACGGCACCAAAACATG 504 103 248 Antisense
GAGAAAGGAGGAGCTCTTCTTCTCT 147 393 319 Antisense
GGGGATTAGATGGGAGACCGGAGGA 51 499 351 Antisense
Sequence Source Affymetrix Proprietary Database