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[181260_at]

Description C14B1.11 /REP_DB=WormBase Gene ID /WP=CE23541 /TR=Q9U3P8 /GB=CAB54193.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.6
(-2.7)
A 		10.1
(3)
A 		3.3
(-3)
A 		9.1
(2.1)
A 		7
B 3.1
(-2.2)
A 		2.9
(-3)
A 		4.2
(2.2)
A 		4.4
(3)
A 		2
C 4.5
(-1.3)
A 		6.4
(1)
A 		3.1
(-3)
A 		8.1
(3)
A 		5
avr 3.7
(-2.7) 		6.5
(1.9) 		3.5
(-3) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 7.6
(-2)
A 		5.8
(-2.4)
A 		2.7
(-3)
A 		4.6
(-2.6)
A 		4.1
(-2.7)
A 		32.3
(3)
A 		30
B 2.8
(-2.7)
A 		2.1
(-3)
A 		6.3
(-1.2)
A 		6.2
(-1.3)
A 		16.3
(3)
A 		15.2
(2.5)
A 		14
C 4.1
(-2.5)
A 		4.3
(-2.4)
A 		3.2
(-3)
A 		14.6
(3)
A 		5.9
(-1.6)
A 		5.3
(-1.9)
A 		11
avr 4.8
(-2.7) 		4.1
(-3) 		4.1
(-3) 		8.5
(-1) 		8.8
(-0.9) 		17.6
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(-1.2)
A 		2.2
(3)
A 		0.9
(-3)
A 		1.3
(-1.2)
A 		1
B 1
(3)
A 		0.7
(-3)
A 		1
(3)
A 		0.9
(1)
A 		0
C 1.5
(0.4)
A 		1.8
(3)
A 		1.1
(-3)
A 		1.4
(-0.4)
A 		1
avr 1.3
(0) 		1.6
(3) 		1
(-3) 		1.2
(-1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.4
(-2.3)
A 		2.1
(-1.8)
A 		0.6
(-3)
A 		1.2
(-2.5)
A 		1.2
(-2.5)
A 		7.9
(3)
A 		7
B 1
(-2.7)
A 		0.7
(-3)
A 		1.5
(-2.2)
A 		1.6
(-2.1)
A 		6.6
(3)
A 		5.7
(2.1)
A 		6
C 1.5
(-1)
A 		1.3
(-1.6)
A 		0.8
(-3)
A 		2.9
(3)
A 		1.9
(0.1)
A 		1.8
(-0.1)
A 		2
avr 1.3
(-2.6) 		1.4
(-2.4) 		1
(-3) 		1.9
(-1.7) 		3.2
(0.2) 		5.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6812
Sequence Type Exemplar sequence
Representative Public ID C14B1.11 NCBI
Target Description C14B1.11 /REP_DB=WormBase Gene ID /WP=CE23541 /TR=Q9U3P8 /GB=CAB54193.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065353 NCBI Caenorhabditis elegans C14B1.7 (C14B1.7) mRNA, complete cds. 11/11 A 
SNAP00000040965 ENSEMBL cdna:SNAP chromosome:CEL140:III:3720278:3723575:-1 11/11 None
GENEFINDER00000040976 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3720278:3723575:-1 11/11 None
C14B1.7 ENSEMBL cdna:known chromosome:CEL140:III:3719951:3723575:-1 gene:C14B1.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3722736-3723390(-) 100.0 100.0
Public Domain and Genome References
Ensembl C14B1.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497754 C14B1.7 [Caenorhabditis elegans] 0.0
blast CAA86741 Hypothetical protein C16C10.3 [Caenorhabditis elegans] ref|NP_497834.1| C16C10.3 [Caenorhabditis elegans] sp|Q09249|YQ53_CAEEL Hypothetical protein C16C10.3 in chromosome III 0.0
blast CAE58274 Hypothetical protein CBG01380 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 2.7E-46
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181260_AT
cccaagtcggcaacaccaatcgggcgcgactctttcgcaacattggacacgttgaatgtt
cagatgaacatgttcacaatggacatcaaggatatgccccacaaactccaacgtcttcaa
gttgacgtcatcatctgttccagcaacggaaaacagatcaatgtcaatcttggagttttg
gcggccaagggagatgttaattcccataaccgtcgcttggcacaattcttcatcatgaga
gcagtccatgacaagcttccggagaagttcagcggaaaaagccaccactttcttgcttac
gactgcgctgcgacgctctatgttccggagggagtctacactggtgacgctgaagaacaa
gtcacgctgaagatcgacgacttcccgaaggatgagtggaaaattgtatcgaagttgtcc
cgcagaaaggacgattcgtaccttgtcactctcaaaccagctggattcgttcacacccaa
ggagaacatgcccgagcagaggcgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAAGTCGGCAACACCAATCGGGC 267 233 25 Antisense
GCGCGACTCTTTCGCAACATTGGAC 9 289 48 Antisense
TCGCTTGGCACAATTCTTCATCATG 223 601 237 Antisense
AGCAGTCCATGACAAGCTTCCGGAG 380 77 264 Antisense
GAAAAAGCCACCACTTTCTTGCTTA 517 353 299 Antisense
GACGCTCTATGTTCCGGAGGGAGTC 238 381 336 Antisense
TTGTATCGAAGTTGTCCCGCAGAAA 45 709 428 Antisense
AAGGACGATTCGTACCTTGTCACTC 509 157 451 Antisense
TGTCACTCTCAAACCAGCTGGATTC 364 559 468 Antisense
CTGGATTCGTTCACACCCAAGGAGA 14 3 485 Antisense
GAACATGCCCGAGCAGAGGCGAATC 6 349 508 Antisense
Sequence Source Affymetrix Proprietary Database