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[181259_at]

Description B0218.6 /REP_DB=WormBase Gene ID /WP=CE06689 /TR=Q17450 /GB=AAB00668.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 03      4grp_high_8_8 > 58      6grp_highest_nonorm > 31      6grp_total > 24      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1572
1 2 3 4 range
A 1633.7
(3)
P 		1079.2
(0.8)
P 		1396.5
(2.1)
P 		129.5
(-3)
A 		1504
B 1513.3
(3)
P 		1221.1
(1.7)
P 		1436.2
(2.7)
P 		165.5
(-3)
P 		1348
C 1701.2
(3)
P 		971.4
(0.2)
P 		1397.4
(1.8)
P 		148.4
(-3)
P 		1553
avr 1616.1
(3) 		1090.6
(0.9) 		1410
(2.2) 		147.8
(-3) 		1468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1046
1 2 3 4 5 6 range
A 1198.2
(2.4)
P 		1286.2
(3)
P 		1250.9
(2.8)
P 		621.6
(-1.6)
P 		427.8
(-3)
P 		436.8
(-2.9)
P 		858
B 1437.4
(3)
P 		1437.7
(3)
P 		1064.8
(0.8)
P 		542.1
(-2.3)
P 		447.5
(-2.8)
P 		417.3
(-3)
P 		1020
C 1396.9
(3)
P 		1384.8
(2.9)
P 		1025.1
(0.8)
P 		686.1
(-1.2)
P 		391.9
(-3)
P 		423.3
(-2.8)
P 		1005
avr 1344.2
(2.8) 		1369.6
(3) 		1113.6
(1.4) 		616.6
(-1.8) 		422.4
(-3) 		425.8
(-3) 		947
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 594.8
(3)
P 		234.3
(-0.8)
P 		365.1
(0.6)
P 		19
(-3)
A 		576
B 482.6
(3)
P 		301.6
(0.6)
P 		332.8
(1)
P 		35.3
(-3)
P 		447
C 563.1
(3)
P 		279.3
(-0.2)
P 		487
(2.2)
P 		25
(-3)
P 		538
avr 546.8
(3) 		271.7
(-0.2) 		395
(1.2) 		26.4
(-3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 220.9
(-1)
P 		457.4
(3)
P 		272.4
(-0.2)
P 		157.7
(-2.1)
P 		129.1
(-2.6)
P 		106.3
(-3)
P 		351
B 500.1
(3)
P 		478.6
(2.6)
P 		258.6
(-1.1)
P 		143.6
(-3)
P 		181.8
(-2.4)
P 		155.6
(-2.8)
P 		357
C 517.8
(3)
P 		422.5
(1.5)
P 		260.9
(-0.9)
P 		138
(-2.8)
P 		126.8
(-3)
P 		141.7
(-2.8)
P 		391
avr 412.9
(2.2) 		452.8
(3) 		264
(-0.6) 		146.4
(-2.8) 		145.9
(-2.8) 		134.5
(-3) 		318
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9778
Sequence Type Exemplar sequence
Representative Public ID B0218.6 NCBI
Target Description B0218.6 /REP_DB=WormBase Gene ID /WP=CE06689 /TR=Q17450 /GB=AAB00668.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068968 NCBI Caenorhabditis elegans C-type LECtin family member (clec-51) (clec-51) mRNA, complete cds. 11/11 None
SNAP00000005556 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8162004:8163757:-1 11/11 None
GENEFINDER00000005563 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8162004:8163757:-1 11/11 None
B0218.6 ENSEMBL cdna:known chromosome:CEL140:IV:8161961:8163757:-1 gene:B0218.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8162009-8163763(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-51
Ensembl B0218.6
Entrez Gene 181854 Entrez gene
SwissProt Q17450 EMBL-EBI
WormBase CE06689 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00668 C-type lectin protein 51 [Caenorhabditis elegans] ref|NP_501369.1| C-type LECtin family member (clec-51) [Caenorhabditis elegans] 1.0E-175
blast AAB00668 C-type lectin protein 51 [Caenorhabditis elegans] ref|NP_501369.1| C-type LECtin family member (clec-51) [Caenorhabditis elegans] 1.0E-169
blast CAE58427 Hypothetical protein CBG01558 [Caenorhabditis briggsae] 1.0E-153
blast CAE58427 Hypothetical protein CBG01558 [Caenorhabditis briggsae] 1.0E-147
blast NP_491247 C-type LECtin family member (clec-53) [Caenorhabditis elegans] gb|AAB42238.2| Hypothetical protein T03F1.10 [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.7E-15
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-18
Sequence
Target Sequence 
>C. ELEGANS:181259_AT
aaagttggtcaaccatctccacaaggagacactgcctgtatgcaacttcaaacaggaact
gccaaatggcaaactacaaactgtactgcacaattaccattcatctgctcttattcgtcg
agtgtaaccccaacttgtccatctgtaacaattccaagccattgtccatctggatacact
tggtatgatgagactgatttctgttacaagaatactgttcgtttcactagtttcaacgat
gctcgcagttcttgtcaagccgacggtggagatcttgcttcgatccattctgcaaatgaa
aatcagttcctcgttgatctttcaaaagccggtatcacaaataaagacaaaagtcatagc
gatgacgttttcattggattagtctatcaaaattcaaaatggcaatggactgatggatct
gcagtcaatttcctcaactggggagatggagagccaaataatatggacaaggaatggtgg
acttcgttggttgctgatccacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTGGTCAACCATCTCCACAAG 269 123 346 Antisense
GGAGACACTGCCTGTATGCAACTTC 313 519 370 Antisense
AATTACCATTCATCTGCTCTTATTC 691 175 437 Antisense
TATTCGTCGAGTGTAACCCCAACTT 675 657 457 Antisense
GAATACTGTTCGTTTCACTAGTTTC 606 325 555 Antisense
TGCTCGCAGTTCTTGTCAAGCCGAC 587 581 585 Antisense
AGCCGACGGTGGAGATCTTGCTTCG 423 83 603 Antisense
ATCTTGCTTCGATCCATTCTGCAAA 391 31 617 Antisense
AATCAGTTCCTCGTTGATCTTTCAA 99 171 646 Antisense
GGATCTGCAGTCAATTTCCTCAACT 52 513 760 Antisense
GACTTCGTTGGTTGCTGATCCACAC 633 371 825 Antisense
Sequence Source Affymetrix Proprietary Database