[Home] | [Total List]

[181258_at]

Description F16F9.3 /REP_DB=WormBase Gene ID /WP=CE09442 /TR=Q94186 /GB=AAB07692.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 41      6grp_total > 14      4grp_total > 54      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 264.3
(3)
P 		131.9
(-1.7)
P 		96.8
(-3)
P 		116.3
(-2.3)
M 		168
B 240.8
(3)
P 		163.8
(0.7)
P 		117.5
(-0.8)
P 		44.2
(-3)
P 		197
C 220.6
(3)
P 		155.6
(0)
P 		130.3
(-1.1)
P 		89.5
(-3)
P 		131
avr 241.9
(3) 		150.4
(-0.5) 		114.9
(-1.8) 		83.3
(-3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 186
(2.7)
P 		196.1
(3)
P 		154.3
(1.7)
P 		144.5
(1.4)
P 		41.7
(-1.9)
A 		5.2
(-3)
A 		191
B 156.7
(3)
P 		141.2
(2.3)
P 		65.6
(-1.3)
P 		62.8
(-1.4)
P 		43.8
(-2.3)
P 		29.5
(-3)
A 		127
C 179.9
(3)
P 		118.6
(0.3)
P 		104.9
(-0.3)
P 		83.1
(-1.3)
P 		44.9
(-3)
A 		49.1
(-2.8)
P 		135
avr 174.2
(3) 		152
(2.1) 		108.3
(0.3) 		96.8
(-0.2) 		43.5
(-2.4) 		27.9
(-3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 96.2
(3)
P 		28.6
(-2.1)
P 		25.3
(-2.4)
P 		17
(-3)
M 		79
B 76.8
(3)
P 		40.5
(-0.2)
P 		27.2
(-1.4)
P 		9.4
(-3)
P 		67
C 73
(3)
P 		44.7
(0.1)
P 		45.4
(0.1)
P 		15.1
(-3)
P 		58
avr 82
(3) 		37.9
(-0.9) 		32.6
(-1.3) 		13.8
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 34.3
(-0.1)
P 		69.7
(3)
P 		33.6
(-0.2)
P 		36.6
(0.1)
P 		12.6
(-2)
A 		1.3
(-3)
A 		68
B 54.5
(3)
P 		47
(2)
P 		15.9
(-2.3)
P 		16.6
(-2.2)
P 		17.8
(-2.1)
P 		11
(-3)
A 		44
C 66.7
(3)
P 		36.2
(-0.5)
P 		26.7
(-1.6)
P 		16.7
(-2.7)
P 		14.5
(-3)
A 		16.4
(-2.8)
P 		52
avr 51.8
(3) 		51
(2.9) 		25.4
(-0.8) 		23.3
(-1.1) 		15
(-2.2) 		9.6
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16105
Sequence Type Exemplar sequence
Representative Public ID F16F9.3 NCBI
Target Description F16F9.3 /REP_DB=WormBase Gene ID /WP=CE09442 /TR=Q94186 /GB=AAB07692.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077035 NCBI Caenorhabditis elegans F16F9.3 (F16F9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000000522 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8457595:8458237:1 11/11 None
SNAP00000000510 ENSEMBL cdna:SNAP chromosome:CEL140:X:8457664:8458237:1 11/11 None
F16F9.3 ENSEMBL cdna:known chromosome:CEL140:X:8457664:8458267:1 gene:F16F9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8457662-8458266(+) 94.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16F9.3
Entrez Gene 184574 Entrez gene
SwissProt Q94186 EMBL-EBI
WormBase CE09442 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB07692 Hypothetical protein F16F9.3 [Caenorhabditis elegans] ref|NP_509436.1| F16F9.3 [Caenorhabditis elegans] 4.0E-75
blast AAB07692 Hypothetical protein F16F9.3 [Caenorhabditis elegans] ref|NP_509436.1| F16F9.3 [Caenorhabditis elegans] 6.0E-73
blast AAB07692 Hypothetical protein F16F9.3 [Caenorhabditis elegans] ref|NP_509436.1| F16F9.3 [Caenorhabditis elegans] 1.0E-72
blast CAE74904 Hypothetical protein CBG22773 [Caenorhabditis briggsae] 1.0E-29
blast CAE74904 Hypothetical protein CBG22773 [Caenorhabditis briggsae] 2.0E-29
blast CAE74904 Hypothetical protein CBG22773 [Caenorhabditis briggsae] 7.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000522 1 26-44
Sequence
Target Sequence 
>C. ELEGANS:181258_AT
tgaaatttgtttacttatcctttctagtaatttttctagtaatttgtttagcacttgcaa
cagaatttgaaagtgcagaatctcacaacgaagatttccatgacgaagttgatgacgctg
atgaaagtatgtacagtgatggaattgaacagtacagtgatgtggctaccaaattgtttt
cttcattaacaccggacactatcaaaaaccatatcaaggacattattcgcgggttttccg
ataaaggatttgaagattgcgataaaaatgctgacaagtatcttgtagatgaggaagttg
ggtgttttatcgctgaaaaaatgggattttcgttgattggcacgctcgagcaagtaatac
agc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAATTTGTTTACTTATCCTTTCT 16 573 14 Antisense
CTCACAACGAAGATTTCCATGACGA 484 227 95 Antisense
ATGACGAAGTTGATGACGCTGATGA 491 45 113 Antisense
GAACAGTACAGTGATGTGGCTACCA 572 349 160 Antisense
TGTGGCTACCAAATTGTTTTCTTCA 301 555 174 Antisense
GTTTTCTTCATTAACACCGGACACT 159 449 189 Antisense
ACACCGGACACTATCAAAAACCATA 71 87 202 Antisense
GGACATTATTCGCGGGTTTTCCGAT 549 523 231 Antisense
GGAAGTTGGGTGTTTTATCGCTGAA 498 531 306 Antisense
GATTTTCGTTGATTGGCACGCTCGA 558 427 338 Antisense
GGCACGCTCGAGCAAGTAATACAGC 515 535 352 Antisense
Sequence Source Affymetrix Proprietary Database