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[181257_at]

Description F17C11.2 /REP_DB=WormBase Gene ID /WP=CE05649 /TR=Q19513 /GB=CAA96624.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 57      6grp_total > 23      4grp_total > 13      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5970
1 2 3 4 range
A 3650.1
(-0.5)
P 		1673.7
(-2.5)
P 		1240.7
(-3)
P 		6971
(3)
P 		5730
B 3532.2
(-0.2)
P 		1667.3
(-2.3)
P 		1049
(-3)
P 		6291.3
(3)
P 		5242
C 3743.2
(0.5)
P 		1838.4
(-1.9)
P 		1001.5
(-3)
P 		5668.8
(3)
P 		4667
avr 3641.8
(-0.1) 		1726.5
(-2.3) 		1097.1
(-3) 		6310.4
(3) 		5213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1231
1 2 3 4 5 6 range
A 3140.6
(3)
P 		2635.4
(0.5)
P 		2921.8
(1.9)
P 		2848.5
(1.6)
P 		1909.6
(-3)
P 		2358.6
(-0.8)
P 		1231
B 2892.8
(3)
P 		2702.1
(1.8)
P 		2873.6
(2.9)
P 		2464.7
(0.2)
P 		1964.4
(-3)
P 		2398.9
(-0.2)
P 		928
C 2845.1
(3)
P 		2812.6
(2.7)
P 		2776.1
(2.3)
P 		2637.2
(1)
P 		2229.4
(-3)
P 		2750
(2.1)
P 		616
avr 2959.5
(3) 		2716.7
(1.4) 		2857.2
(2.3) 		2650.1
(1) 		2034.5
(-3) 		2502.5
(0) 		925
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1098
1 2 3 4 range
A 1329
(3)
P 		363.3
(-2.8)
P 		324.3
(-3)
P 		1020.4
(1.2)
P 		1005
B 1126.4
(1.8)
P 		411.8
(-2.1)
P 		243.1
(-3)
P 		1340.7
(3)
P 		1098
C 1239.1
(3)
P 		528.5
(-1.8)
P 		349.1
(-3)
P 		955.8
(1.1)
P 		890
avr 1231.5
(3) 		434.5
(-2.2) 		305.5
(-3) 		1105.6
(2.2) 		926

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 578.9
(-2.9)
P 		937.3
(3)
P 		636.3
(-2)
P 		722.4
(-0.6)
P 		576.2
(-3)
P 		574.2
(-3)
P 		363
B 1006.6
(3)
P 		899.4
(1.2)
P 		697.8
(-2.2)
P 		652.8
(-3)
P 		798.1
(-0.5)
P 		894.5
(1.1)
P 		354
C 1054.6
(3)
P 		858.2
(0.8)
P 		706.6
(-1)
P 		530.3
(-3)
P 		721.4
(-0.8)
P 		920.6
(1.5)
P 		524
avr 880
(2.6) 		898.3
(3) 		680.2
(-2) 		635.2
(-3) 		698.6
(-1.6) 		796.4
(0.7) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14356
Sequence Type Exemplar sequence
Representative Public ID F17C11.2 NCBI
Target Description F17C11.2 /REP_DB=WormBase Gene ID /WP=CE05649 /TR=Q19513 /GB=CAA96624.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073391 NCBI Caenorhabditis elegans F17C11.2 (F17C11.2) mRNA, complete cds. 11/11 None
SNAP00000033895 ENSEMBL cdna:SNAP chromosome:CEL140:V:10950866:10951363:1 11/11 None
GENEFINDER00000033913 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10950866:10951363:1 11/11 None
F17C11.2.1 ENSEMBL cdna:known chromosome:CEL140:V:10950815:10951653:1 gene:F17C11.2 11/11 None
F17C11.2.2 ENSEMBL cdna:known chromosome:CEL140:V:10950817:10951717:1 gene:F17C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10950877-10951363(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17C11.2
Entrez Gene 184614 Entrez gene
SwissProt Q19513 EMBL-EBI
WormBase CE05649 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96624 Hypothetical protein F17C11.2 [Caenorhabditis elegans] ref|NP_505792.1| F17C11.2 [Caenorhabditis elegans] 1.0E-47
blast CAE75129 Hypothetical protein CBG23057 [Caenorhabditis briggsae] 2.0E-42
Sequence
Target Sequence 
>C. ELEGANS:181257_AT
ttaccatccttgccatttcagatattgtgaatggtgctccacaagccccaacatcatgtg
caattgacgaacgtgctcagattccatgtgtgtgctgcaagaaggactgttggtattcaa
tcgcagcggctgccacacatgagcttggacatatgccaggagaagcgggagaacgtgaag
caatggcaactttgaagcttatccgtgcctgcatgatctctgaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCATCCTTGCCATTTCAGATAT 152 681 32 Antisense
TCCACAAGCCCCAACATCATGTGCA 157 589 69 Antisense
ATGTGCAATTGACGAACGTGCTCAG 710 49 87 Antisense
ACGTGCTCAGATTCCATGTGTGTGC 536 95 102 Antisense
GTGTGTGCTGCAAGAAGGACTGTTG 694 487 119 Antisense
TGGTATTCAATCGCAGCGGCTGCCA 359 551 142 Antisense
GGCTGCCACACATGAGCTTGGACAT 653 539 159 Antisense
TGAGCTTGGACATATGCCAGGAGAA 375 569 171 Antisense
GAACGTGAAGCAATGGCAACTTTGA 697 345 202 Antisense
AACTTTGAAGCTTATCCGTGCCTGC 624 139 219 Antisense
CCGTGCCTGCATGATCTCTGAATGC 331 265 234 Antisense
Sequence Source Affymetrix Proprietary Database