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[181255_s_at]

Description K07F5.14 /REP_DB=WormBase Gene ID /WP=CE06128 /TR=Q21298 /GB=CAA94285.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      4grp_high_8_8 > 0      6grp_total > 67      4grp_total > 07      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 176.4
(3)
P 		146
(-3)
P 		151.9
(-1.8)
P 		164.1
(0.6)
M 		30
B 161.3
(-3)
P 		173.6
(-1.5)
P 		197
(1.4)
P 		209.6
(3)
P 		48
C 221.8
(3)
P 		178.4
(-1.6)
P 		194.3
(0.1)
P 		165.2
(-3)
P 		57
avr 186.5
(3) 		166
(-3) 		181.1
(1.4) 		179.6
(1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 150
(0.7)
P 		75.5
(-3)
P 		130.5
(-0.3)
P 		141
(0.2)
P 		118.7
(-0.9)
P 		196.8
(3)
P 		121
B 128.7
(-2.8)
P 		195.1
(-0.1)
P 		161.2
(-1.5)
P 		123.1
(-3)
M 		173.7
(-1)
P 		272.2
(3)
P 		149
C 158.6
(-0.9)
P 		176.7
(-0)
P 		112.5
(-3)
P 		170.9
(-0.3)
P 		133.5
(-2)
P 		243
(3)
P 		131
avr 145.8
(-2.4) 		149.1
(-2.2) 		134.7
(-3) 		145
(-2.4) 		142
(-2.6) 		237.3
(3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 64.2
(3)
P 		31.7
(-1.9)
P 		39.7
(-0.7)
P 		24
(-3)
M 		40
B 51.4
(3)
P 		42.9
(-3)
P 		45.7
(-1)
P 		44.7
(-1.7)
P 		9
C 73.4
(3)
P 		51.3
(0.1)
P 		67.7
(2.3)
P 		27.8
(-3)
P 		46
avr 63
(3) 		42
(-1.1) 		51
(0.7) 		32.2
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 27.6
(-2.8)
P 		26.9
(-3)
P 		28.4
(-2.6)
P 		35.8
(-0.5)
P 		35.8
(-0.5)
P 		47.9
(3)
P 		21
B 44.8
(-1.9)
P 		64.9
(-0.2)
P 		39.1
(-2.4)
P 		32.6
(-3)
M 		70.6
(0.3)
P 		101.5
(3)
P 		69
C 58.8
(0.4)
P 		53.9
(-0.1)
P 		28.6
(-3)
P 		34.4
(-2.3)
P 		43.2
(-1.3)
P 		81.4
(3)
P 		53
avr 43.7
(-1.4) 		48.6
(-0.8) 		32
(-3) 		34.3
(-2.7) 		49.9
(-0.6) 		76.9
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181255_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8653
Sequence Type Exemplar sequence
Representative Public ID K07F5.14 NCBI
Target Description K07F5.14 /REP_DB=WormBase Gene ID /WP=CE06128 /TR=Q21298 /GB=CAA94285.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069372 NCBI Caenorhabditis elegans K07F5.14 (K07F5.14) mRNA, complete cds. 11/11 None
SNAP00000004257 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9862197:9863965:1 11/11 None
GENEFINDER00000004270 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9862197:9863965:1 11/11 None
K07F5.14 ENSEMBL cdna:known chromosome:CEL140:IV:9862194:9863994:1 gene:K07F5.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9862202-9865766(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07F5.14
Entrez Gene 177837 Entrez gene
WormBase CE29594 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629272_AT dm
DROSGENOME1:154638_AT dm
CHICKEN:GGA.10764.1.S1_S_AT nucleolar protein 8 gga
CHICKEN:GGA.11682.1.S1_S_AT nucleolar protein 8 gga
CHICKEN:GGAAFFX.26300.1.S1_AT nucleolar protein 8 gga
HU35KSUBC:RC_N63102_AT nucleolar protein 8 hs
HU35KSUBC:RC_H98527_AT nucleolar protein 8 hs
HU35KSUBD:RC_R44357_AT nucleolar protein 8 hs
HG-U133A:218244_AT nucleolar protein 8 hs
HG-U133_PLUS_2:218244_AT nucleolar protein 8 hs
HG-U133A_2:218244_AT nucleolar protein 8 hs
U133_X3P:G8923662_3P_AT nucleolar protein 8 hs
HG-U95C:61921_AT nucleolar protein 8 hs
HG-U95C:62177_AT nucleolar protein 8 hs
HG-U95C:64662_AT nucleolar protein 8 hs
MG-U74BV2:115061_AT nucleolar protein 8 mm
MG-U74BV2:163999_AT nucleolar protein 8 mm
MOE430B:1428950_S_AT nucleolar protein 8 mm
MOUSE430_2:1428950_S_AT nucleolar protein 8 mm
MOE430B:1452974_AT nucleolar protein 8 mm
MOUSE430_2:1452974_AT nucleolar protein 8 mm
MOE430B:1428951_AT nucleolar protein 8 mm
MOUSE430_2:1428951_AT nucleolar protein 8 mm
MU19KSUBA:TC17064_AT nucleolar protein 8 mm
RG-U34C:RC_AI072050_AT nucleolar protein 8 (predicted) rn
RAE230A:1373445_AT nucleolar protein 8 (predicted) rn
RAT230_2:1373445_AT nucleolar protein 8 (predicted) rn
RAE230B:1385009_AT nucleolar protein 8 (predicted) rn
RAT230_2:1385009_AT nucleolar protein 8 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA94285 Hypothetical protein K07F5.14 [Caenorhabditis elegans] ref|NP_501773.1| K07F5.14 [Caenorhabditis elegans] 0.0
blast CAE59977 Hypothetical protein CBG03469 [Caenorhabditis briggsae] 1.0E-134
blast XP_414299 PREDICTED: similar to Nop132 [Gallus gallus] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:181255_S_AT
aaatctctactcaaagtgaaagttagcacaaagtttttcgtcgatcctctgtcggatgaa
aaaatcaaaagtttagcggctaatttcagaagaactcaaacagtggagaaagttattgat
aaatgggcacctcatcgagatgctattttcaagctctggaagaaacaacgtcgtgatgca
gtaaaaaagcagaaagattcatttttcacaaatggaaaacgaaaacggaaagctgataca
ggaaacgaagatgctcctgagactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTCTACTCAAAGTGAAAGTTA 307 117 1012 Antisense
GCACAAAGTTTTTCGTCGATCCTCT 377 317 1037 Antisense
TTTCGTCGATCCTCTGTCGGATGAA 49 671 1047 Antisense
TTTAGCGGCTAATTTCAGAAGAACT 380 461 1083 Antisense
GATAAATGGGCACCTCATCGAGATG 445 423 1129 Antisense
GGCACCTCATCGAGATGCTATTTTC 124 537 1137 Antisense
TGCTATTTTCAAGCTCTGGAAGAAA 227 577 1152 Antisense
GCTCTGGAAGAAACAACGTCGTGAT 660 297 1164 Antisense
ACAACGTCGTGATGCAGTAAAAAAG 60 113 1176 Antisense
AACGAAAACGGAAAGCTGATACAGG 596 87 1229 Antisense
GAAACGAAGATGCTCCTGAGACTGC 136 359 1253 Antisense
Sequence Source Affymetrix Proprietary Database