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[181254_at]

Description K07F5.14 /REP_DB=WormBase Gene ID /WP=CE06128 /TR=Q21298 /GB=CAA94285.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 46      6grp_total > 71      4grp_total > 03      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12142
1 2 3 4 range
A 3177
(-2.3)
P 		1787.3
(-3)
P 		2124.1
(-2.8)
P 		13929.2
(3)
P 		12142
B 3159.6
(-2.6)
P 		2373.4
(-3)
P 		2380.5
(-3)
P 		13450.6
(3)
P 		11077
C 3321.9
(-2.4)
P 		2492.5
(-2.9)
P 		2279.8
(-3)
P 		13210.4
(3)
P 		10931
avr 3219.5
(-2.5) 		2217.7
(-3) 		2261.5
(-3) 		13530.1
(3) 		11312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2317
1 2 3 4 5 6 range
A 2524.4
(-2)
P 		3007.4
(-0)
P 		3725.6
(3)
P 		3283.2
(1.1)
P 		2702.8
(-1.3)
P 		2295.9
(-3)
P 		1430
B 2284.2
(-3)
P 		3429.2
(1.8)
P 		2569
(-1.8)
P 		3730.2
(3)
P 		3273
(1.1)
P 		2502.9
(-2.1)
P 		1446
C 2860.1
(-2.1)
P 		3386.2
(-0.5)
P 		2884.9
(-2)
P 		4601.3
(3)
P 		2542.1
(-3)
P 		2754.8
(-2.4)
P 		2059
avr 2556.2
(-2.8) 		3274.3
(0.4) 		3059.8
(-0.6) 		3871.6
(3) 		2839.3
(-1.6) 		2517.9
(-3) 		1354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2478
1 2 3 4 range
A 1156.8
(-0.2)
P 		388
(-3)
P 		555.3
(-2.4)
P 		2039
(3)
P 		1651
B 1007.6
(-1.8)
P 		586.2
(-2.9)
P 		551.6
(-3)
P 		2866.3
(3)
P 		2315
C 1099.6
(-1.5)
P 		716.6
(-3)
P 		794.6
(-2.7)
P 		2227.5
(3)
P 		1511
avr 1088
(-1.3) 		563.6
(-3) 		633.8
(-2.8) 		2377.6
(3) 		1814

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 865
1 2 3 4 5 6 range
A 465.3
(-3)
P 		1069.6
(3)
P 		811.4
(0.4)
P 		832.7
(0.6)
P 		815.6
(0.5)
P 		559
(-2.1)
P 		604
B 794.8
(-1.5)
P 		1141.4
(1.4)
P 		623.8
(-3)
P 		988
(0.1)
P 		1329.8
(3)
P 		933.3
(-0.4)
P 		706
C 1060.1
(3)
P 		1033.2
(2.5)
P 		734.2
(-3)
P 		925.3
(0.5)
P 		822.6
(-1.4)
P 		922.2
(0.5)
P 		326
avr 773.4
(-2.2) 		1081.4
(3) 		723.1
(-3) 		915.3
(0.2) 		989.3
(1.5) 		804.8
(-1.6) 		358
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181254_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8653
Sequence Type Exemplar sequence
Representative Public ID K07F5.14 NCBI
Target Description K07F5.14 /REP_DB=WormBase Gene ID /WP=CE06128 /TR=Q21298 /GB=CAA94285.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028100, NM_069373
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07F5.15.3 ENSEMBL cdna:known chromosome:CEL140:IV:9865051:9866125:1 gene:K07F5.15 None
K07F5.15.2 ENSEMBL cdna:known chromosome:CEL140:IV:9865051:9865907:1 gene:K07F5.15 None
SNAP00000004258 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9864168:9866053:1 None
NM_069373 NCBI Caenorhabditis elegans K07F5.15 (K07F5.15) mRNA, complete cds. None
NM_001028100 NCBI Caenorhabditis elegans K07F5.16 (K07F5.16) mRNA, complete cds. None
K07F5.16 ENSEMBL cdna:known chromosome:CEL140:IV:9864168:9864848:1 gene:K07F5.16 None
GENEFINDER00000004268 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9864168:9864848:1 None
K07F5.15.1 ENSEMBL cdna:known chromosome:CEL140:IV:9865049:9866136:1 gene:K07F5.15 A 
GENEFINDER00000004266 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9865597:9866053:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9862202-9865766(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl K07F5.16
K07F5.15
Entrez Gene 177838 Entrez gene
3565979 Entrez gene
WormBase CE29595 Wormbase
CE34920 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HU35KSUBA:R78190_AT chromosome 1 open reading frame 119 hs
HU35KSUBC:RC_AA460653_AT chromosome 1 open reading frame 119 hs
U133_X3P:HS.82933.0.A2_3P_AT chromosome 1 open reading frame 119 hs
HG-U133_PLUS_2:222495_AT chromosome 1 open reading frame 119 hs
HG-U133B:222495_AT chromosome 1 open reading frame 119 hs
HG-U95C:65958_AT chromosome 1 open reading frame 119 hs
HG-U95E:87950_AT chromosome 1 open reading frame 119 hs
U133_X3P:HS2.406889.1.S1_3P_S_AT Chromosome 1 open reading frame 119 hs
HG-U133_PLUS_2:1559116_S_AT Chromosome 1 open reading frame 119 hs
HG-U95C:52567_AT Chromosome 1 open reading frame 119 hs
HU35KSUBC:RC_H94026_AT Chromosome 1 open reading frame 119 hs
MG-U74BV2:162816_AT RIKEN cDNA 2010200O16 gene mm
MOE430B:1452998_AT RIKEN cDNA 2010200O16 gene mm
MOUSE430_2:1452998_AT RIKEN cDNA 2010200O16 gene mm
MOE430B:1429042_AT RIKEN cDNA 2010200O16 gene mm
MOUSE430_2:1429042_AT RIKEN cDNA 2010200O16 gene mm
RG-U34B:RC_AI013181_AT similar to RIKEN cDNA 2010200O16 rn
RAE230B:1377964_AT similar to RIKEN cDNA 2010200O16 rn
RAT230_2:1377964_AT similar to RIKEN cDNA 2010200O16 rn
RAE230B:1393186_AT similar to RIKEN cDNA 2010200O16 rn
RAT230_2:1393186_AT similar to RIKEN cDNA 2010200O16 rn
Protein Similarities
Method ID Description E-Value
blast CAE17884 Hypothetical protein K07F5.16 [Caenorhabditis elegans] ref|NP_001023271.1| K07F5.16 [Caenorhabditis elegans] 1.0E-86
blast CAE17884 Hypothetical protein K07F5.16 [Caenorhabditis elegans] ref|NP_001023271.1| K07F5.16 [Caenorhabditis elegans] 6.0E-85
blast CAE59976 Hypothetical protein CBG03468 [Caenorhabditis briggsae] 1.0E-50
blast CAE59976 Hypothetical protein CBG03468 [Caenorhabditis briggsae] 5.0E-49
blast CAD01085 Hypothetical protein K07F5.15 [Caenorhabditis elegans] ref|NP_501774.1| K07F5.15 [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 3.99999988687227E-9
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.99999996490334E-13
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 9.0000003502848E-15
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 5.4E-18
Pfam IPR009653 EMBL-EBI Protein of unknown function DUF1242 1.3E-42
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.5E-8
Pfam IPR009653 EMBL-EBI Protein of unknown function DUF1242 3.4E-40
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 3.5E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501774.1 2 7-29,49-71
K07F5.15.1 2 7-29,49-71
K07F5.15.3 2 7-29,49-71
K07F5.15.2 2 7-29,49-71
SNAP00000004258 2 62-84,110-132
Sequence
Target Sequence 
>C. ELEGANS:181254_AT
tgctcctgagactgccgtaatgtcattttcggatgttttggatgcaaaaccaaaagagcc
aaagctctatcgattgcttgggtgtgatgaaagctcttcgacctttttacttgccagacg
attctacaagttttgtatgaacgtctactcgtttgacggtcttgtcgttgctgctctatt
attcatctgcacctgtgcttatttgaaacgagttccacgtgttagtagctggctgttgtc
tgagaagaagggattcttcggagttttttataaggctgctgtaattggtgtccgacttca
ttctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCTGAGACTGCCGTAATGTCA 634 581 1263 Antisense
GAGCCAAAGCTCTATCGATTGCTTG 403 385 1318 Antisense
GATGAAAGCTCTTCGACCTTTTTAC 694 393 1348 Antisense
GACCTTTTTACTTGCCAGACGATTC 496 383 1362 Antisense
GTCTACTCGTTTGACGGTCTTGTCG 478 465 1405 Antisense
GCTGCTCTATTATTCATCTGCACCT 360 297 1432 Antisense
CTGCACCTGTGCTTATTTGAAACGA 271 237 1449 Antisense
GAGTTCCACGTGTTAGTAGCTGGCT 67 395 1472 Antisense
GTAGCTGGCTGTTGTCTGAGAAGAA 227 457 1487 Antisense
AAGGCTGCTGTAATTGGTGTCCGAC 411 161 1534 Antisense
TAATTGGTGTCCGACTTCATTCTCT 649 633 1544 Antisense
Sequence Source Affymetrix Proprietary Database