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[181252_at]

Description Y76A2B.4 /REP_DB=WormBase Gene ID /WP=CE19276 /TR=Q9XWD0 /GB=CAA21745.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 42      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 401.8
(-3)
P 		476.4
(1.3)
P 		430.6
(-1.3)
P 		504.7
(3)
P 		103
B 417.5
(-2.5)
P 		521.9
(3)
P 		445.7
(-1)
P 		407.5
(-3)
P 		114
C 365.6
(-3)
P 		502.4
(3)
P 		485.2
(2.2)
P 		382.9
(-2.2)
P 		137
avr 395
(-3) 		500.2
(3) 		453.8
(0.4) 		431.7
(-0.9) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 450.6
(-0.1)
P 		406.4
(-1.8)
P 		418.3
(-1.4)
P 		374.9
(-3)
P 		476.2
(0.8)
P 		533.3
(3)
P 		158
B 405.9
(-1.1)
P 		369.7
(-1.8)
P 		314.2
(-3)
P 		464.7
(0.1)
P 		432.5
(-0.5)
P 		603
(3)
P 		289
C 444.4
(0.8)
P 		390.1
(-1)
P 		423.5
(0.1)
P 		327.2
(-3)
P 		423.5
(0.1)
P 		511.4
(3)
P 		184
avr 433.6
(-1.2) 		388.7
(-2.9) 		385.3
(-3) 		388.9
(-2.9) 		444.1
(-0.8) 		549.2
(3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 146.3
(3)
P 		103.4
(-0.6)
P 		112.6
(0.2)
P 		73.9
(-3)
P 		72
B 133.1
(3)
P 		128.9
(2.5)
P 		103.3
(-0.9)
P 		86.8
(-3)
P 		46
C 121
(0.2)
P 		144.5
(1.6)
P 		169.1
(3)
P 		64.6
(-3)
P 		105
avr 133.5
(3) 		125.6
(2.2) 		128.3
(2.5) 		75.1
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 83.1
(-3)
P 		144.5
(3)
P 		91.1
(-2.2)
P 		95.1
(-1.8)
P 		143.7
(2.9)
P 		129.8
(1.6)
P 		61
B 141.2
(-0.4)
P 		123
(-1.1)
P 		76.3
(-3)
P 		123.1
(-1.1)
P 		175.7
(1)
P 		224.9
(3)
P 		149
C 164.7
(2.6)
P 		119
(0)
P 		107.8
(-0.6)
P 		65.8
(-3)
P 		137
(1.1)
P 		171.2
(3)
P 		105
avr 129.7
(-0.3) 		128.8
(-0.3) 		91.7
(-3) 		94.7
(-2.8) 		152.1
(1.3) 		175.3
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6575
Sequence Type Exemplar sequence
Representative Public ID Y76A2B.4 NCBI
Target Description Y76A2B.4 /REP_DB=WormBase Gene ID /WP=CE19276 /TR=Q9XWD0 /GB=CAA21745.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067399 NCBI Caenorhabditis elegans Y76A2B.4 (Y76A2B.4) mRNA, complete cds. 11/11 None
GENEFINDER00000001233 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13543187:13546273:-1 11/11 None
SNAP00000001231 ENSEMBL cdna:SNAP chromosome:CEL140:III:13545008:13548520:-1 11/11 None
Y76A2B.4 ENSEMBL cdna:known chromosome:CEL140:III:13545008:13546273:-1 gene:Y76A2B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13545003-13546269(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y76A2B.4
Entrez Gene 190729 Entrez gene
SwissProt Q9XWD0 EMBL-EBI
WormBase CE19276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21746 Hypothetical protein Y76A2B.5 [Caenorhabditis elegans] ref|NP_499801.1| Y76A2B.5 [Caenorhabditis elegans] 1.0E-160
blast CAE69262 Hypothetical protein CBG15313 [Caenorhabditis briggsae] 1.0E-155
blast CAA21745 Hypothetical protein Y76A2B.4 [Caenorhabditis elegans] ref|NP_499800.1| Y76A2B.4 [Caenorhabditis elegans] 8.0E-72
blast CAA21745 Hypothetical protein Y76A2B.4 [Caenorhabditis elegans] ref|NP_499800.1| Y76A2B.4 [Caenorhabditis elegans] 1.0E-70
blast CAA21745 Hypothetical protein Y76A2B.4 [Caenorhabditis elegans] ref|NP_499800.1| Y76A2B.4 [Caenorhabditis elegans] 6.0E-70
blast CAE69261 Hypothetical protein CBG15312 [Caenorhabditis briggsae] 1.0E-33
blast CAE69261 Hypothetical protein CBG15312 [Caenorhabditis briggsae] 8.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499800.1 2 47-69,84-106
Y76A2B.4 2 47-69,84-106
GENEFINDER00000001233 3 47-69,84-106,154-172
SNAP00000001231 2 327-349,364-386
Sequence
Target Sequence 
>C. ELEGANS:181252_AT
aggacgaggcggacgtctacacgtcgcagcgatcagaacccccagagacacggattttcg
agacgatggggttttactggaaacggattatgaaaaccctacctacattcaccacccaaa
ttgtgttaatcttctgtgttctgcccatctcattctccatcgccatcttcctcgccaccg
cgattctcaattttggagtcgcttttattgcacaaaccatctccacactgctgattctgc
tcattctgatcccaacacttgccgtctgtatcacaagtgccatcgccaccgcctatatcc
ttcagctcactcaatcgatataccttagattatcccagtcacctcactcttccccaaata
cctcatatcccagaatccattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACGAGGCGGACGTCTACACGTC 248 55 32 Antisense
TACACGTCGCAGCGATCAGAACCCC 180 643 49 Antisense
CAGAACCCCCAGAGACACGGATTTT 20 179 65 Antisense
ATGAAAACCCTACCTACATTCACCA 236 43 121 Antisense
TTGTGTTAATCTTCTGTGTTCTGCC 450 709 152 Antisense
GCCACCGCGATTCTCAATTTTGGAG 577 277 205 Antisense
GGAGTCGCTTTTATTGCACAAACCA 420 517 226 Antisense
TTGCCGTCTGTATCACAAGTGCCAT 491 701 290 Antisense
ATCCTTCAGCTCACTCAATCGATAT 585 39 328 Antisense
TACCTTAGATTATCCCAGTCACCTC 430 649 352 Antisense
ATACCTCATATCCCAGAATCCATTC 451 23 389 Antisense
Sequence Source Affymetrix Proprietary Database