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[181251_at]

Description M03A1.6 /REP_DB=WormBase Gene ID /WP=CE07393 /TR=Q21478 /GB=AAA93436.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 83      6grp_total > 85      4grp_total > 04      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 552.8
(-1.6)
P 		482.1
(-3)
P 		519.9
(-2.2)
P 		778.4
(3)
P 		296
B 576.4
(-1.3)
P 		476.3
(-3)
P 		515.9
(-2.3)
P 		830.9
(3)
P 		355
C 565.8
(-1.2)
P 		465.5
(-3)
P 		506.1
(-2.3)
P 		800.9
(3)
P 		335
avr 565
(-1.4) 		474.6
(-3) 		514
(-2.3) 		803.4
(3) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 420.5
(-2.1)
P 		493.2
(-0.2)
P 		386.1
(-3)
P 		570.8
(1.8)
P 		465.8
(-0.9)
P 		617.6
(3)
P 		232
B 378.6
(-2)
P 		351
(-3)
P 		401.1
(-1.2)
P 		443.8
(0.4)
P 		513.7
(3)
P 		499.3
(2.5)
P 		163
C 482.6
(-0.6)
P 		384.8
(-3)
P 		552.4
(1.1)
P 		563
(1.4)
P 		629.7
(3)
P 		566.7
(1.5)
P 		245
avr 427.2
(-2.3) 		409.7
(-3) 		446.5
(-1.5) 		525.9
(1.6) 		536.4
(2) 		561.2
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 201.3
(3)
P 		104.7
(-3)
P 		135.9
(-1.1)
P 		113.9
(-2.4)
P 		97
B 183.8
(3)
P 		117.6
(-3)
P 		119.6
(-2.8)
P 		177.1
(2.4)
P 		66
C 187.3
(3)
P 		133.8
(-3)
P 		176.4
(1.8)
P 		135
(-2.9)
P 		54
avr 190.8
(3) 		118.7
(-3) 		144
(-0.9) 		142
(-1.1) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 77.5
(-3)
P 		175.4
(3)
P 		84.1
(-2.6)
P 		144.8
(1.1)
P 		140.6
(0.9)
P 		150.4
(1.5)
P 		98
B 131.7
(-1.2)
P 		116.8
(-2)
P 		97.4
(-3)
P 		117.6
(-1.9)
P 		208.7
(3)
P 		186.2
(1.8)
P 		111
C 178.9
(1.4)
P 		117.4
(-2.7)
P 		140.6
(-1.2)
P 		113.2
(-3)
P 		203.8
(3)
P 		189.7
(2.1)
P 		91
avr 129.4
(-1.3) 		136.5
(-0.7) 		107.4
(-3) 		125.2
(-1.6) 		184.4
(3) 		175.4
(2.3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5874
Sequence Type Exemplar sequence
Representative Public ID M03A1.6 NCBI
Target Description M03A1.6 /REP_DB=WormBase Gene ID /WP=CE07393 /TR=Q21478 /GB=AAA93436.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170978(11), NM_170979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170978 NCBI Caenorhabditis elegans M03A1.6b (M03A1.6) mRNA, complete cds. 11/11 None
NM_170979 NCBI Caenorhabditis elegans M03A1.6a (M03A1.6) mRNA, complete cds. 11/11 None
M03A1.6b.3 ENSEMBL cdna:known chromosome:CEL140:II:4590940:4598908:-1 gene:M03A1.6 11/11 A 
M03A1.6b.2 ENSEMBL cdna:known chromosome:CEL140:II:4590940:4600009:-1 gene:M03A1.6 11/11 A 
M03A1.6b.1 ENSEMBL cdna:known chromosome:CEL140:II:4590940:4597986:-1 gene:M03A1.6 11/11 A 
M03A1.6b.4 ENSEMBL cdna:known chromosome:CEL140:II:4590967:4600385:-1 gene:M03A1.6 11/11 A 
M03A1.6a ENSEMBL cdna:known chromosome:CEL140:II:4591448:4596686:-1 gene:M03A1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4591446-4596568(-) 100.0 100.0
Public Domain and Genome References
Ensembl M03A1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32232 Hypothetical protein M03A1.6b [Caenorhabditis elegans] ref|NP_740975.1| M03A1.6b [Caenorhabditis elegans] 0.0
blast AAA93436 Hypothetical protein M03A1.6a [Caenorhabditis elegans] ref|NP_740976.1| M03A1.6a [Caenorhabditis elegans] 0.0
blast CAE67854 Hypothetical protein CBG13444 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004177 EMBL-EBI DDHD domain 1.0E-126
Pfam IPR004177 EMBL-EBI DDHD domain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181251_AT
ctcgaataccgatcttcgtgcacgtgcatcttatgaaaatttgcccctggatgtctataa
gcattatctgaaaaagctgaagaatctcaacaaggcgaagaagaacaaggatgacaaaac
tgctgatgctcgaagtggtggagacgatgagaatgaagatgaggacgagtgtgattcgga
tgaggatgctcgaagcggatgctcatcgccacgatcgatgacacctccgccattcgagac
tgctgctgctaatgcggcagctgctgcgaaggagacgaaggcagtgaagaagggatggtt
ctcgtttggaacatcaagtaatccaaaaaagacacaaagtactgcgagtctaggatctgt
gaatgcgacgtcgacggagaatatcgaatttgcgaaggaagcggctgaggaattgccgtt
ggctgagaagatattgggtagtggtgttcgagtgccgcatcgaatcgattttcagttaca
gccagccctcaccgaaaaaagctactggtcagtactaaaatcacattttgcgtattggac
aaacgccgatctagcactattcctcgccaacgtgctctactgtaaacctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGAATACCGATCTTCGTGCACGT 375 229 1686 Antisense
GAAAATTTGCCCCTGGATGTCTATA 569 353 1720 Antisense
ATGCTCGAAGCGGATGCTCATCGCC 112 43 1871 Antisense
CATCGCCACGATCGATGACACCTCC 572 209 1889 Antisense
TTCGAGACTGCTGCTGCTAATGCGG 186 695 1918 Antisense
GGATCTGTGAATGCGACGTCGACGG 633 509 2038 Antisense
TGGGTAGTGGTGTTCGAGTGCCGCA 644 553 2120 Antisense
AATCGATTTTCAGTTACAGCCAGCC 138 169 2148 Antisense
GCCAGCCCTCACCGAAAAAAGCTAC 501 277 2166 Antisense
GACAAACGCCGATCTAGCACTATTC 707 365 2223 Antisense
CAACGTGCTCTACTGTAAACCTCTG 301 187 2253 Antisense
Sequence Source Affymetrix Proprietary Database