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[181250_at]

Description K06H6.4 /REP_DB=WormBase Gene ID /WP=CE11834 /TR=O17105 /GB=AAB70360.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 1.8
(-3)
A 		22.9
(-1.1)
A 		65.9
(2.8)
P 		67.9
(3)
A 		66
B 1.6
(-3)
A 		7.3
(1.6)
A 		9.1
(3)
A 		3.1
(-1.8)
A 		8
C 1.5
(-3)
A 		35.3
(-0.8)
A 		7.2
(-2.6)
A 		94.5
(3)
A 		93
avr 1.6
(-3) 		21.8
(-0.7) 		27.4
(-0.1) 		55.2
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 8
(-1.4)
A 		1.2
(-3)
A 		15.8
(0.4)
A 		11
(-0.7)
A 		3.5
(-2.5)
A 		26.8
(3)
A 		26
B 5.7
(-2.6)
A 		1.7
(-3)
A 		58.5
(3)
A 		20.1
(-1.1)
A 		15.5
(-1.5)
A 		12.3
(-1.9)
A 		57
C 4.1
(-2.5)
A 		1
(-3)
A 		2.9
(-2.7)
A 		3.6
(-2.6)
A 		5.7
(-2.3)
A 		40.2
(3)
A 		39
avr 5.9
(-1.9) 		1.3
(-3) 		25.7
(2.8) 		11.6
(-0.5) 		8.2
(-1.4) 		26.4
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 0.6
(-3)
A 		5
(-1.4)
A 		17.2
(3)
P 		9.9
(0.4)
A 		17
B 0.5
(-3)
A 		1.8
(1.9)
A 		2.1
(3)
A 		0.7
(-2.3)
A 		2
C 0.5
(-3)
A 		10.1
(0.7)
A 		2.5
(-2.2)
A 		15.9
(3)
A 		15
avr 0.5
(-3) 		5.6
(0.7) 		7.3
(1.9) 		8.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.5
(-1.9)
A 		0.4
(-3)
A 		3.4
(-0)
A 		2.8
(-0.6)
A 		1.1
(-2.3)
A 		6.5
(3)
A 		6
B 2
(-2.4)
A 		0.6
(-3)
A 		14.2
(3)
A 		5.3
(-0.9)
A 		6.3
(-0.5)
A 		4.6
(-1.2)
A 		14
C 1.5
(-2.5)
A 		0.3
(-3)
A 		0.7
(-2.8)
A 		0.7
(-2.8)
A 		1.8
(-2.3)
A 		13.5
(3)
A 		13
avr 1.7
(-2) 		0.4
(-3) 		6.1
(1.4) 		2.9
(-1.1) 		3.1
(-0.9) 		8.2
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15015
Sequence Type Exemplar sequence
Representative Public ID K06H6.4 NCBI
Target Description K06H6.4 /REP_DB=WormBase Gene ID /WP=CE11834 /TR=O17105 /GB=AAB70360.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070850 NCBI Caenorhabditis elegans K06H6.4 (K06H6.4) mRNA, complete cds. 11/11 None
SNAP00000003551 ENSEMBL cdna:SNAP chromosome:CEL140:V:579694:581201:1 11/11 None
GENEFINDER00000003557 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:579016:581201:1 11/11 None
K06H6.4 ENSEMBL cdna:known chromosome:CEL140:V:579016:581201:1 gene:K06H6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:579015-581201(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H6.4
Entrez Gene 187073 Entrez gene
SwissProt O17105 EMBL-EBI
WormBase CE11834 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70360 Hypothetical protein K06H6.4 [Caenorhabditis elegans] ref|NP_503251.1| K06H6.4 [Caenorhabditis elegans] 0.0
blast AAB94266 Hypothetical protein C14C6.8 [Caenorhabditis elegans] ref|NP_503243.2| C14C6.8 [Caenorhabditis elegans] 0.0
blast CAB05623 Hypothetical protein T15D6.10 [Caenorhabditis elegans] ref|NP_493141.1| T15D6.10 [Caenorhabditis elegans] 0.0
blast CAB05623 Hypothetical protein T15D6.10 [Caenorhabditis elegans] ref|NP_493141.1| T15D6.10 [Caenorhabditis elegans] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181250_AT
tacttctcgaagtggacagcgctgatcgatattgacgagagattggaaattagaaatgag
caatttaagacagtagttgactatttagactcaatccacaatgcgtcaattgcgaacctt
cgtttccgagtgaaatgggttataaaggacaataatacacctgaaagatatgaaaatgat
aaacagattactgatgaaatgctcttccacaaatatcaaaacacttcccagctcggaaat
ttttttgatcagccgaagtgcattattcgaccggaaaatgttgcaattatgaccatacat
gggccattgacaatgtacaaaggagagagaataacttcagtcgacaaagacattgggttt
ataagacattatcgaagtgtggagcagagagtttttccgggagccctcgaaagaatgatg
aaacatgctccattcaacattctaccagtggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTCTCGAAGTGGACAGCGCTGA 493 645 802 Antisense
TGGACAGCGCTGATCGATATTGACG 561 547 814 Antisense
AATGCGTCAATTGCGAACCTTCGTT 270 167 901 Antisense
TGCGAACCTTCGTTTCCGAGTGAAA 592 579 912 Antisense
GAAATGCTCTTCCACAAATATCAAA 17 363 997 Antisense
AAATATCAAAACACTTCCCAGCTCG 161 115 1012 Antisense
TCCCAGCTCGGAAATTTTTTTGATC 32 599 1027 Antisense
GCCGAAGTGCATTATTCGACCGGAA 273 285 1053 Antisense
GAGCAGAGAGTTTTTCCGGGAGCCC 693 389 1183 Antisense
TTTTCCGGGAGCCCTCGAAAGAATG 87 673 1194 Antisense
CATTCAACATTCTACCAGTGGAGCA 60 217 1232 Antisense
Sequence Source Affymetrix Proprietary Database