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[181247_at]

Description F55F8.8 /REP_DB=WormBase Gene ID /WP=CE11202 /TR=P91347 /GB=AAB37813.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 21.6
(-3)
A 		77.2
(-0.5)
A 		154.7
(3)
P 		48.7
(-1.8)
A 		133
B 45
(-2.1)
A 		164.5
(3)
A 		143
(2.1)
A 		23.7
(-3)
A 		141
C 51.1
(-3)
A 		126.6
(2.6)
A 		131.6
(3)
P 		58.8
(-2.4)
A 		81
avr 39.2
(-3) 		122.8
(1.8) 		143.1
(3) 		43.7
(-2.7) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 212.1
(3)
A 		104.4
(-1.6)
P 		72
(-3)
A 		122.9
(-0.8)
P 		182.9
(1.7)
P 		136.1
(-0.3)
P 		140
B 83.4
(-2)
A 		114.3
(-0.5)
A 		62.4
(-3)
A 		115.1
(-0.5)
A 		186.6
(3)
P 		99.7
(-1.2)
A 		124
C 99.1
(-3)
M 		147.8
(0.8)
A 		112.3
(-2)
A 		145.5
(0.7)
M 		175.3
(3)
P 		134.4
(-0.2)
P 		76
avr 131.5
(-0) 		122.2
(-0.6) 		82.2
(-3) 		127.8
(-0.2) 		181.6
(3) 		123.4
(-0.5) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 7.9
(-2.9)
A 		16.8
(-1.3)
A 		40.4
(3)
P 		7.1
(-3)
A 		33
B 14.4
(-1.4)
A 		40.6
(3)
A 		33.1
(1.7)
A 		5
(-3)
A 		36
C 16.9
(-1.8)
A 		36.4
(1.4)
A 		45.9
(3)
P 		9.9
(-3)
A 		36
avr 13.1
(-1.9) 		31.3
(1.4) 		39.8
(3) 		7.3
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 39.1
(0.6)
A 		37.1
(0.3)
P 		15.7
(-3)
A 		31.2
(-0.6)
P 		55.2
(3)
P 		33.1
(-0.4)
P 		40
B 29
(-1.6)
A 		38.1
(-0.7)
A 		15.2
(-3)
A 		30.5
(-1.5)
A 		75.8
(3)
P 		37.2
(-0.8)
A 		61
C 36.7
(-1.3)
M 		45.1
(0.5)
A 		28.6
(-3)
A 		29.3
(-2.9)
M 		56.7
(3)
P 		45
(0.5)
P 		28
avr 34.9
(-0.9) 		40.1
(-0.2) 		19.8
(-3) 		30.3
(-1.5) 		62.6
(3) 		38.4
(-0.4) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.775
Sequence Type Exemplar sequence
Representative Public ID F55F8.8 NCBI
Target Description F55F8.8 /REP_DB=WormBase Gene ID /WP=CE11202 /TR=P91347 /GB=AAB37813.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059258 NCBI Caenorhabditis elegans F55F8.8 (F55F8.8) mRNA, complete cds. 11/11 None
SNAP00000024473 ENSEMBL cdna:SNAP chromosome:CEL140:I:5667151:5668840:-1 11/11 None
GENEFINDER00000024478 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5667151:5668840:-1 11/11 None
F55F8.8 ENSEMBL cdna:known chromosome:CEL140:I:5667151:5668840:-1 gene:F55F8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5667150-5668840(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55F8.8
Entrez Gene 186321 Entrez gene
SwissProt P91347 EMBL-EBI
WormBase CE11202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37813 Hypothetical protein F55F8.8 [Caenorhabditis elegans] ref|NP_491659.1| F55F8.8 [Caenorhabditis elegans] 1.0E-119
blast CAE68932 Hypothetical protein CBG14912 [Caenorhabditis briggsae] 9.0E-64
Sequence
Target Sequence 
>C. ELEGANS:181247_AT
gacggtcaaccattaactggacgacacaatttggaaacaaatacaatgacatctgtatct
attgaatcaccaattcctgctccaatacctccaccacctcttccaggtcaacaagtcatc
attcgtccagctccacctccgactattgaagatgatcggacgtttttagcaaagatgtcg
gaacaagaatctcttgtgaatcagttaaattcaattgcaacacgggaagctgtatcgaga
aatggattattggttatggaaggagctttgctgaatgcacttcgtccattaacaatgcca
ttgttaggagcaggcccaccgattccaggacattttgttccattccagagaatgcaaaga
ccaattgaacaatcaccaattgataaccgtgtggaagttcagtcaagaccgccagcccca
caattaccaatgcgattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGTCAACCATTAACTGGACGAC 189 377 178 Antisense
TATTGAATCACCAATTCCTGCTCCA 574 665 237 Antisense
CCACCTCTTCCAGGTCAACAAGTCA 704 273 271 Antisense
TCAACAAGTCATCATTCGTCCAGCT 259 629 285 Antisense
CTCCACCTCCGACTATTGAAGATGA 157 237 308 Antisense
GGAGCTTTGCTGAATGCACTTCGTC 579 519 439 Antisense
GCACTTCGTCCATTAACAATGCCAT 497 315 454 Antisense
GCCATTGTTAGGAGCAGGCCCACCG 548 203 474 Antisense
GCCCACCGATTCCAGGACATTTTGT 181 287 491 Antisense
GTGTGGAAGTTCAGTCAAGACCGCC 471 485 566 Antisense
AGCCCCACAATTACCAATGCGATTG 354 83 591 Antisense
Sequence Source Affymetrix Proprietary Database