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[181246_at] 7TM chemoreceptor, srw family

Description C44C3.2 /REP_DB=WormBase Gene ID /WP=CE08708 /TR=P91159 /GB=AAG23983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 29      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 34.1
(3)
A 		7.7
(-3)
A 		21.7
(0.2)
A 		16.9
(-0.9)
A 		26
B 23.8
(-3)
A 		55.2
(3)
A 		25.1
(-2.8)
A 		32.9
(-1.3)
A 		31
C 51
(2.6)
A 		30.6
(0.1)
A 		4.9
(-3)
A 		53.9
(3)
A 		49
avr 36.3
(3) 		31.2
(1.4) 		17.2
(-3) 		34.6
(2.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 30.9
(0.6)
A 		28.7
(0.3)
A 		48.7
(3)
A 		3.6
(-3)
A 		18.4
(-1)
A 		13.2
(-1.7)
A 		45
B 3.8
(-3)
A 		29.9
(0.9)
A 		25.5
(0.2)
A 		7.1
(-2.5)
A 		44.4
(3)
A 		24.1
(0)
A 		41
C 2.2
(-3)
A 		55.1
(3)
A 		38.8
(1.2)
A 		34.1
(0.6)
A 		28.2
(-0.1)
A 		37
(0.9)
A 		53
avr 12.3
(-3) 		37.9
(3) 		37.7
(3) 		14.9
(-2.4) 		30.3
(1.2) 		24.8
(-0.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.4
(3)
A 		1.7
(-3)
A 		5.7
(-0.8)
A 		2.5
(-2.6)
A 		11
B 7.6
(-1.6)
A 		13.6
(3)
A 		5.8
(-3)
A 		7
(-2.1)
A 		8
C 16.9
(3)
A 		8.8
(-0.2)
A 		1.7
(-3)
A 		9.1
(-0.1)
A 		15
avr 12.3
(3) 		8
(-0.3) 		4.4
(-3) 		6.2
(-1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.7
(-0)
A 		10.2
(2.8)
A 		10.6
(3)
A 		0.9
(-3)
A 		5.6
(-0.1)
A 		3.2
(-1.6)
A 		10
B 1.3
(-3)
A 		9.9
(0.1)
A 		6.2
(-1.3)
A 		1.9
(-2.8)
A 		18.1
(3)
A 		9
(-0.3)
A 		17
C 0.8
(-3)
A 		16.8
(3)
A 		9.9
(0.4)
A 		6.9
(-0.7)
A 		9.1
(0.1)
A 		12.4
(1.4)
A 		16
avr 2.6
(-3) 		12.3
(3) 		8.9
(0.9) 		3.2
(-2.6) 		10.9
(2.1) 		8.2
(0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14850
Sequence Type Exemplar sequence
Representative Public ID C44C3.2 NCBI
Target Description C44C3.2 /REP_DB=WormBase Gene ID /WP=CE08708 /TR=P91159 /GB=AAG23983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071408 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-129) (srw-129) mRNA, complete cds. 11/11 None
GENEFINDER00000011853 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2971776:2973312:1 11/11 None
C44C3.2 ENSEMBL cdna:known chromosome:CEL140:V:2971776:2973312:1 gene:C44C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2971775-2973312(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-129
Ensembl C44C3.2
Entrez Gene 183441 Entrez gene
SwissProt P91159 EMBL-EBI
WormBase CE08708 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23983 Serpentine receptor, class w protein 129 [Caenorhabditis elegans] ref|NP_503809.1| Serpentine Receptor, class W family member (srw-129) [Caenorhabditis elegans] 0.0
blast T33245 hypothetical protein H27D07.1 - Caenorhabditis elegans 1.0E-162
blast AAG24167 Serpentine receptor, class w protein 136 [Caenorhabditis elegans] ref|NP_503821.2| Serpentine Receptor, class W family member (srw-136) [Caenorhabditis elegans] 3.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503809.1 7 36-58,65-87,129-146,158-179,221-243,273-295,310-332
C44C3.2 7 36-58,65-87,129-146,158-179,221-243,273-295,310-332
GENEFINDER00000011853 7 36-58,65-87,129-146,158-179,221-243,273-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:181246_AT
ccattcaccgtgataggctttttaaaatacgatatagttgaaatgggattttggtacgag
tgtgttcgagctataaatgggagacaatatgttatggttatctccaagttttaccggcat
aacaaattattgatagaacttctagagactctaaatgctcttatttccaaaatcagtccc
tgtctgctttttccgattgtcaccatatttctgattaaagaaattaggaaagctgatgaa
aaccggagaaaaatatcatcctcttcatcagccaaaacttcggattctcgaaaaacatcc
cgattggtgttatatatgacaattatgttcttcgtttccgggtttccatatggtcttaat
actgtagttggcttctattatgtacatgttcccggtatatggcaaatcctacaagagatc
gggtttatgctgtcgcttttattaaagttgaacacaatgtcccattttgtagtatgctta
tgtatgtcacatcaatatcggcaaactgcaattggtatcatattctgtggacatttggca
ttacaagataaaaaatcaagtgttgttgctgtgtctcaaaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTCACCGTGATAGGCTTTTTAA 432 269 526 Antisense
TTGGTACGAGTGTGTTCGAGCTATA 579 703 576 Antisense
GAGACTCTAAATGCTCTTATTTCCA 519 393 670 Antisense
TCCAAAATCAGTCCCTGTCTGCTTT 303 587 691 Antisense
TTTTCCGATTGTCACCATATTTCTG 198 677 714 Antisense
TCCTCTTCATCAGCCAAAACTTCGG 391 593 784 Antisense
TTCCGGGTTTCCATATGGTCTTAAT 480 681 861 Antisense
GGTCTTAATACTGTAGTTGGCTTCT 487 503 877 Antisense
GGCTTCTATTATGTACATGTTCCCG 264 537 895 Antisense
AGATCGGGTTTATGCTGTCGCTTTT 382 67 941 Antisense
GTGTTGTTGCTGTGTCTCAAAACCA 532 485 1085 Antisense
Sequence Source Affymetrix Proprietary Database